CCCTTTCTTNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCG
NAAACACGCGGAATTCCATGGGTCTTCTCATGGAACACTATTTATGTAAC
TCTTGGTAGTGCACTTTTATTCTCCATAAATTACTAGTCTTTCTCAACTT
CAGACATCCCCGAAGAGCTGGCAAGGTGTTAGCACCCTGCACTATTAGGC
CTGACATGGTGTCAATAGATGAGAGGACTCATTATCTTCTGCAGTGCTAC
CCCAGTGCACTAGATACATGAATCTGATGGGAACCAGGTTGGTCCCTTAC
TGTCCATATATTTCTATTGAAAGTTTGTATCTCTTTGTGAATAATAACCT
ATTGTTGGCATTCCTTCCTATCTTATCATTCCTTCCAAATACACAAATAC
AACTTGCATCCAGTCCCTCCTTGATGAAACTTCCCAACTCTAGCATATAT
CACATGCATCAAAATCACATTCATCCCTAAAATTTGCTTCTTATAGTGAA
GGTAGTGACACTACAGGATTGTTGTAGGAGTGGTGGCTATGTATGCCTAG
AACAAGCTAACTTCATTCCATCTCTCCACTGCTGCTGTTCTCTCCAGTTC
AGTTTAAGAATGCCGCGAATGGTATCAGGTTCACCTGATACCCTTATTCA
AAAATAAAACATTCTTCCAACTCATAAGGCACTAAAGAATACAGAATTCA
ATACCGTGTCTCCTGTTGCCCT

TTATCGCTTTTTTACAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACACCCCACT
TTCACCAAAGGAGAGATCATGGAAACAGAAACAAAACAGAGATACAGTAA
AACTAACAGAAGTTATGGAACAATTGGATTTAACAGCTATCTACAGAACA
TTTCACCCTAAAACAAGATAATATACCTTCTTCTCAGCATCTCATGGTAC
CCTCTCAAAAATCAACCAAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGC
ACCCGACTGCTCTTCCAAAGGTCTGAAGTTCATATCCCAGCAACCACATG
GTGGCTCACAACCATCTGTAACAAGATCTGATGCCCTCTTCTGGAGTGTC
TGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTAAAAA
AAAAAAATCAACCAAATATTCAGACACAAAACTAACCTCAACAAATACAA
GAACATTGAATTAATCTGACATATACTATCTGTTCACCATGGACTAAGGC
TGGTCTTCAATAATAACAAAAATAACAGGAAGCTCACATATATATGGAAG
CTGAACAACTATCTACTCAATGATGATGTCACCAGGGAAGAAATAAATAA
AGAAATGAAAGCCTTTTTAGAATTTTAATGAAATGAAGGTACAACATATT
TTAAACTATGGGACACAATGAAAGTAGTGN

Query= MSMg01no503_i09.b1 MSMg01no503_i09.b1 CHROMAT_FILE:
MSMg01no503_i09.b1 PHD_FILE: MSMg01no503_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:49 2005
         (540 letters)



>mm_chr13_28281544_28282483
          Length = 940

 Score = 1029 bits (532), Expect = 0.0
 Identities = 538/540 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatttatgtaactcttggtagtgcacttttattctccataaattactagtctttctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatttatgtaactcttggtagtgcacttttattctccataaattactagtctttctca 260

                                                                       
Query: 61  acttcagacatccccgaagagctggcaaggtgttagcaccctgcactattaggcctgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttcagacatccccgaagagctggcaaggtgttagcaccctgcactattaggcctgaca 320

                                                                       
Query: 121 tggtgtcaatagatgagaggactcattatcttctgcagtgctaccccagtgcactagata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtgtcaatagatgagaggactcattatcttctgcagtgctaccccagtgcactagata 380

                                                                       
Query: 181 catgaatctgatgggaaccaggttggtcccttactgtccatatatttctattgaaagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgaatctgatgggaaccaggttggtcccttactgtccatatatttctattgaaagttt 440

                                                                       
Query: 241 gtatctctttgtgaataataacctattgttggcattccttcctatcttatcattccttcc 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagctctttgtgaataataacctattgttggcattccttcctatcttatcattccttcc 500

                                                                       
Query: 301 aaatacacaaatacaacttgcatccagtccctccttgatgaaacttcccaactctagcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatacacaaatacaacttgcatccagtccctccttgatgaaacttcccaactctagcat 560

                                                                       
Query: 361 atatcacatgcatcaaaatcacattcatccctaaaatttgcttcttatagtgaaggtagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatcacatgcatcaaaatcacattcatccctaaaatttgcttcttatagtgaaggtagt 620

                                                                       
Query: 421 gacactacaggattgttgtaggagtggtggctatgtatgcctagaacaagctaacttcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacactacaggattgttgtaggagtggtggctatgtatgcctagaacaagctaacttcat 680

                                                                       
Query: 481 tccatctctccactgctgctgttctctccagttcagtttaagaatgccgcgaatggtatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 tccatctctccactgctgctgttctctccagttcagtttaagaatgccgtgaatggtatc 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)