BAC Information

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BAC

Clone NameMSMg01-503L21
Chromosome13 (Build37)
Map Location 96,011,572 - 96,011,985
singlet/doubletsinglet
Overlap genePde8b
Upstream geneScamp1, LOC435378, ENSMUSG00000042857, Ap3b1, Tbca, Otp, Wdr41
Downstream geneZbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503L21.T7 (MSMg01no503_l21.b1)MSMg01-503L21.TJ (MSMg01no503_l21.g1)
ACCAG578786AG578787
length741735
length of high quality
(start - end)
216 (58 - 273)584 (83 - 666)
definitionCHROMAT_FILE: MSMg01no503_l21.b1 PHD_FILE: MSMg01no503_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:07 2005CHROMAT_FILE: MSMg01no503_l21.g1 PHD_FILE: MSMg01no503_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGTTTCCCCNTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTC
CAGGATCCGCGGAATTCCTTGAGATTACAAATGACTGCTCAGGTGCTCAA
CACATGTGTGCGCATGTGCATGCATACACACAGAGACACAACACACACAC
ACACACACACACACACACACACACACACACAGACAGACACTTTGCAAGCC
TTCTGTAGATTCTGCAAAAAATTGAACCCTTCTCTCTTCCTCCCTCCCTG
TGTATGTGTGTNNGTGTGTGCCACAATTTGGGCCCAAAACCCAAAACACC
CGGGGNTGGGGGGGCCCCCCAAAATATTGTGTGGGGCGCCCCCACCAACA
AAATTATTTTTTTTCTTCCTTCTTTCTGGGGGGGGGTGGCGCCGCGTCCT
AAATTTAAAAAATAAAATATAACTTCCTTCTTAGTCTTTCCTTTTTCCCC
TTCGCCTTTCCTTTTAAACTTAAATAAAAAATTGGCGGGGCGGTTTGGTC
CGGTTTCGACCACTTCATTTCACCAATTAACCCTTCCCCCCTTCCTCTTT
TATTCCCTTCCTCTGCCCTCTCGCGTGCTCTCTTTACTTTTCCCACCCAT
ATACTCTCCTTTTTCTGCCCCCCCCTTTTTTTCCCAATATTTTCCTTCCC
TCACCTTTTATTCTTTCGCTTTCCGCCACCATTTACCCCATAATCCAAAC
TTGCGCCTTCTTTTTCTTCTCCTATTTTTTCTCTTTTATTA
CATTTTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGACTGTTTTTGTTT
ATAATACAGCACTTTAGAAACCAGTTCTCATGGTATTGCTACTTGTGTGG
CGGGCATAACTTCTGTCAGAAATGCCACCATTCACCCACAATCTTTGCAG
CAGCAGGAAGGATCCCATGGGTACAAGAAACGATGGGGATGGGGTGGGGA
ACGAATCAGGACAGTGACTGTAGGGAAGGACAAAGGAAGGGATGGAAGGG
AACTGCTCATGGAGGAAGGATGACACTGTGTGTCACAGCACATAGGGTCT
GCAGTGATATTGTCTGACTACAGCAGACACAGACAAGGTTCTGCATCTGT
TTCAGGCCCCGTGTGGTAACCTCAGGGCTGAGGCATTAATGGGTTGCCAC
TCACTTCCCCCCAGTTTGGTGGGTGCATCGGTAAGGAAGCTTTTGGGGTA
AAAATGAAGCCCCCAGCAGAAGGATGGAAGGAAGGAGGCTAGGGGCAACT
GTCATTTGATCCCACCTGTCAGATGGCCTCTTGACTCTGTCCAGGTATAG
CTGTACTACCTTGTCCTCTCCTCTCCAGTCTCTCCTCCTGCCTTTACAGC
AGCGGCTTCCAATCCTCCTGATACCTTGATCCTTTATACAGTTCCTCATG
TTGTGGTGACCCCCCAACATAACATGATTTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_l21.g1 MSMg01no503_l21.g1 CHROMAT_FILE:
MSMg01no503_l21.g1 PHD_FILE: MSMg01no503_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:07 2005
         (584 letters)



>mm_chr13_96011202_96012185
          Length = 984

 Score =  777 bits (402), Expect = 0.0
 Identities = 411/414 (99%)
 Strand = Plus / Minus

                                                                       
Query: 171 gaatcaggacagtgactgtagggaaggacaaaggaagggatggaagggaactgctcatgg 230
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gaatcaggagagtgactgtagggaaggacaaaggaagggatggaagggaactgctcatgg 725

                                                                       
Query: 231 aggaaggatgacactgtgtgtcacagcacatagggtctgcagtgatattgtctgactaca 290
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aggaaggatgacacagtgtgtcacagcacatagggtctgcagtgatattgtctgactaca 665

                                                                       
Query: 291 gcagacacagacaaggttctgcatctgtttcaggccccgtgtggtaacctcagggctgag 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gcagacacagacaaggttctgcatctgtttcaggccccgtgtggtaacctcagggctgag 605

                                                                       
Query: 351 gcattaatgggttgccactcacttccccccagtttggtgggtgcatcggtaaggaagctt 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gcattaatgggttgccactcacttccccccagtttggtgggtgcatcggtaaggaagctt 545

                                                                       
Query: 411 ttggggtaaaaatgaagcccccagcagaaggatggaaggaaggaggctaggggcaactgt 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ttggggtaaaaatgaagcccccagcagaaggatggaaggaaggaggctaggggcaactgt 485

                                                                       
Query: 471 catttgatcccacctgtcagatggcctcttgactctgtccaggtatagctgtactacctt 530
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 484 catttgatcccacctgtcagatggcttcttgactctgtccaggtatagctgtactacctt 425

                                                                 
Query: 531 gtcctctcctctccagtctctcctcctgcctttacagcagcggcttccaatcct 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gtcctctcctctccagtctctcctcctgcctttacagcagcggcttccaatcct 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)