Query= MSMg01no505_g04.b1 MSMg01no505_g04.b1 CHROMAT_FILE:
MSMg01no505_g04.b1 PHD_FILE: MSMg01no505_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:17 2005
(681 letters)
>mm_chr13_49044122_49045202
Length = 1081
Score = 1208 bits (625), Expect = 0.0
Identities = 662/681 (97%), Gaps = 13/681 (1%)
Strand = Plus / Minus
Query: 1 actccttttggagcagtgtgtcatatgattggtcctggcactttttgatcatttggatga 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 723 actccttttggagcagtgtgtcacatgattggtcctggcactttttgatcatttggatga 664
Query: 61 ttaatgctcatatcagtagctctttaaagatgtcaggtacatttgcctgttgaacctgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ttaatgctcatatcagtagctctttaaagatgtcaggtacatttgcctgttgaacctgct 604
Query: 121 gctgcagttagagcctgcatctgatggcatctccttccttttctgtgtgtaggttgcaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gctgcagttagagcctgcatctgatggcatctccttccttttctgtgtgtaggttgcaca 544
Query: 181 gagcattgaggatcatcatcaagaagtgattggcttctgcagagagaatggtttccatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gagcattgaggatcatcatcaagaagtgattggcttctgcagagagaatggtttccatgg 484
Query: 241 cttggtggtttatgactccgattatgcactgtgcaacatcccctactacttcagtgccca 300
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cttggtggcatatgactccgattatgcactgtgcaacatcccctactacttcagtgccca 424
Query: 301 tgccctgaaactgagccgcaacgggaagagtctcaccacaagccagtatctgatgcacga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgccctgaaactgagccgcaacgggaagagtctcaccacaagccagtatctgatgcacga 364
Query: 361 ggttgccaagcaactggacctgaacccaaatcgttttcctatttttgctgctctgttagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggttgccaagcaactggacctgaacccaaatcgttttcctatttttgctgctctgttagg 304
Query: 421 taggtggagtggtacataagcaccctgacattatctatcttttgaaggttttccgccggg 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 303 taggtggagtggtacataagcatcctgacattatctatcttttgaaggttttccgcctgg 244
Query: 481 atgctttgctgttctatcagggggagaatgggctcttcacttgggctcttcacttgcact 540
||||||||||||| ||||||||||||||||||||||||||||| |||| ||
Sbjct: 243 atgctttgctgttttatcagggggagaatgggctcttcacttg-------cact----ct 195
Query: 541 ctcctggttttgttttctgctggcaatgcattgttcttctttctactttctagcatgttt 600
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ct--tggttttgttttctgctggcaatgcattgttcttctttctactttctagcatgttt 137
Query: 601 atatgttgcttacatgttcttctatcaaggctggaaaacttactctgtgataggctcaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 atatgttgcttacatgttcttctatcaaggctggaaaacttactctgtgataggctcaaa 77
Query: 661 gttttagagaaagaacatttc 681
|||||||||||||||||||||
Sbjct: 76 gttttagagaaagaacatttc 56
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_g04.g1 MSMg01no505_g04.g1 CHROMAT_FILE:
MSMg01no505_g04.g1 PHD_FILE: MSMg01no505_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:17 2005
(487 letters)
>mm_chr13_48859676_48860562
Length = 887
Score = 743 bits (384), Expect = 0.0
Identities = 463/492 (94%), Gaps = 14/492 (2%)
Strand = Plus / Plus
Query: 1 ttccggtggtgatggcggagactgcca-ccgttctaatagcctccaggcctacagggtgg 59
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 205 ttccggtggtgatggcggagactgtcacccgttctaatagcctccaggcctacagggtgg 264
Query: 60 atgtggtcctcctgtctctctctctctctctctctctctctctctctctccttctctctc 119
||||| | |||||||||||||||||||||||||||||||| || ||| |||| ||| |
Sbjct: 265 atgtgattctcctgtctctctctctctctctctctctctc---ct-tct-cttc-ctc-c 317
Query: 120 tccttctcttcctcctcctcttcctcctgggacttggaaatcccacctctattcctttgt 179
|||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 318 tcctcctcctcctcctcctcttcctcctgggacctggaaatcccacctctattcctttgc 377
Query: 180 ccagcaattggcttctaccatctttatggacgccatcaagaagcaattagggaaccagat 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 378 ccagcaattggcttctaccatctttattgacgccatcaagaagcaattagggaaccagat 437
Query: 240 tatata-ttatc---tcctccccctatggattccagtattcgggaagacagtctttaaga 295
| | || |||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 438 t-t-tagctatcaggtcctccccctatggattccagtattcaggaagacagtctttaaga 495
Query: 296 gctatgatttggggagctttacattttagtgattttgctctttgggggaccaatatttga 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gctatgatttggggagctttacattttagtgattttgctctttgggggaccaatatttga 555
Query: 356 gactacagtgtatcttttggaagtgtggtgggtactccaggtttagggaatggtattcag 415
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 556 gactacagtgtatcttttggaagtgtggtgggtactccaggcttagggaatggttttcag 615
Query: 416 ctaacaccagacagccactcaggttgaatggcaacttcgtggctgattccacaggcgatc 475
|||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 616 ctaacaccgggcagccactcaggttgaatggcaacttcgtggctgattccacagacgatc 675
Query: 476 ttcacttttcta 487
||||||||||||
Sbjct: 676 ttcacttttcta 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
