Query= MSMg01no506_g10.b1 MSMg01no506_g10.b1 CHROMAT_FILE:
MSMg01no506_g10.b1 PHD_FILE: MSMg01no506_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:35 2005
(657 letters)
>mm_chr13_17418951_17420007
Length = 1057
Score = 1060 bits (548), Expect = 0.0
Identities = 632/668 (94%), Gaps = 22/668 (3%)
Strand = Plus / Plus
Query: 1 acaatgagagagcagagcactgaaagaaacacatttgaaatcggaggtattaagacacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaatgagagagcagagcactgaaagaaacacatttgaaatcggaggtattaagacacca 260
Query: 61 gataagtgattccttgtcaagttgcagtgttgtgagtaacaaaaaacaaaacaaaacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gataagtgattccttgtcaagttgcagtgttgtgagtaacaaaaaacaaaacaaaacaaa 320
Query: 121 acaaaaacaacaaaaaacc----aaaaaaaaaaccacgctattgcctttgcccatgactg 176
||||||||||||||| || ||||||| ||||||||||||||||||||||||||
Sbjct: 321 acaaaaacaacaaaa--ccccccaaaaaaa----cacgctattgcctttgcccatgactg 374
Query: 177 ccgctgctgctgcccttgctctggcctcccaacttccgtttgttcctctggcttagctcc 236
| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 375 ctgctgctgctgcccttgctctggcctcccagcttccttttgttcctctggcttagctcc 434
Query: 237 actaagctgctatcaccttt--ccagcttctctctacccaccttggctccaaagatgaaa 294
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 435 actaagctgctatcacc---agccagcttctctctacccaccttggctccacagatgaaa 491
Query: 295 aacactcagacagctttattactttagaacttgcctactagcacaattgtcgggcacaga 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aacactcagacagctttattactttagaacttgcctactagcacaattgtcgggcacaga 551
Query: 355 ttctcctcctctaaac-taatcggctcacctgtatcagctacaccgcctccctgctcaac 413
||||||| |||||||| || || |||||||||||||||||||||||||||| ||||||||
Sbjct: 552 ttctccttctctaaaccta-tcagctcacctgtatcagctacaccgcctccgtgctcaac 610
Query: 414 ctccttgagcatacacccttggcagaggccactgactctagcttccct-aagatcttaca 472
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 611 ctccttgagcatacacccttggcagaggccactgactctagcttcccccaagatcttaca 670
Query: 473 tgatagctgtgtgcttctcattccaaaacctggctttaaaaagcccttccctttccct-- 530
||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 671 tgatagctgcgtgcttctcattccaaaacctggttttaaaaagcccttctctttccctgc 730
Query: 531 -tctacttttccttctgggacccagaagtcacacctatcccttcaacccagcaaatgtct 589
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 731 atctacttttcctcctgggacccagaagtcccacctatcccttcaacccagcaaatgtct 790
Query: 590 cccagcctcctttattgaccaagtcaaaaatcaattatggaaccagaccttagtatcaag 649
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 791 cc-agcctcctttattgaccaagtcaagaatcaattatggaaccagaccttagtatcaag 849
Query: 650 caccttcc 657
||||||||
Sbjct: 850 caccttcc 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_g10.g1 MSMg01no506_g10.g1 CHROMAT_FILE:
MSMg01no506_g10.g1 PHD_FILE: MSMg01no506_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:35 2005
(237 letters)
>mm_chr13_17464253_17464889
Length = 637
Score = 458 bits (237), Expect = e-133
Identities = 237/237 (100%)
Strand = Plus / Minus
Query: 1 atgaaagtattcttgtcctaatgaaaagctagatgattgttccatcccatgtgtttcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atgaaagtattcttgtcctaatgaaaagctagatgattgttccatcccatgtgtttcatg 248
Query: 61 atgaatgagtaatttaggccaactttcctttaaaaatttggagagaggtgaaggctcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 atgaatgagtaatttaggccaactttcctttaaaaatttggagagaggtgaaggctcaat 188
Query: 121 gccccagtgtaggagaattctagggtggtgagccgagagtgggagggtgggtgggtgagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gccccagtgtaggagaattctagggtggtgagccgagagtgggagggtgggtgggtgagc 128
Query: 181 accctcatagaagcagggggaggagggatgaaggatgagataggggatttgaggacg 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 accctcatagaagcagggggaggagggatgaaggatgagataggggatttgaggacg 71
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space: 143184
Effective search space used: 143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
