BAC Information

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BAC

Clone NameMSMg01-506N17
Chromosome13 (Build37)
Map Location 98,286,360 - 98,419,765
singlet/doubletdoublet
Overlap geneEG328314, LOC100039526
Upstream genePolk, Col4a3bp, Hmgcr, LOC100039456, LOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704
Downstream geneLOC100039740, Rgnef, LOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506N17.T7 (MSMg01no506_n17.b1)MSMg01-506N17.TJ (MSMg01no506_n17.g1)
ACCAG581149AG581150
length754763
length of high quality
(start - end)		426 (329 - 754)671 (76 - 746)
definitionCHROMAT_FILE: MSMg01no506_n17.b1 PHD_FILE: MSMg01no506_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:11 2005CHROMAT_FILE: MSMg01no506_n17.g1 PHD_FILE: MSMg01no506_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,419,341 - 98,419,765)(98,286,360 - 98,287,030)
sequence
ACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCG
GAATCATCTTAGTTCCCTAAATCCCCAGGACCCCAGCTTCAGAGAGGAAA
TGAGTCACTTGGATTTCACTAGCAGATATGGTGCACACGATGAGAAATTC
TGATAAGGTTCCTGAATCGGAAGTCATTTCATTCTCATTCTGGCCTCACT
TCATCCCACCCCCAATGCCCCCTTCTCCCCAGGGAAACCTCAGCCCCGAT
AGCCTTTCACCAACTCACAGGCTCCAAAGCTCAGTAAAAGACCTAGATGA
AGCAGGGTCCCTTTTGTCAGGGTTATTAATCAACAGGAGAATTTCATGGT
CAGGAGGCAACTCGGAGTAATTAAAGTCCAACACCCAATCCTCTCCTGGC
ACCCACACCTTGACTCATGGTCTTGTAGTCCAACTTTGTGCTTAGAGTTT
TCAAAAGCTCACAGTGGAATTCCATGGATCCATTTGTGTTGAAAGAACCC
TCAGCTCAGTCCCAGGGCAACACAACAACACACTCCTCCATGAAGCTCCA
ACAGTCTTCTACAACACCATACTCCAGACGTGGAGGCTACCCCCGCAGGG
ATGAGTGATGCAAGAACCTTGGAGAAACACCCATTAAAAACAACTCACAT
CTACAACTGCCCAGTGTCCCGCCTATATGATCTCCATCCCTACTTCTTTC
TCAGTTTTACAGATGAAGAAATAGTTTCTGGTCTAGGGAGAGACCTCTTT
TGGC

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACTGGATCAATATTTAATTTTAGT
TGTGGAAGGTGAGGCCAAGCATTCAGAAATATCTTCAAATTTCTTTGCAT
AATAAAAAGATCTCTCTTAATTTATTTACAGTTTAATTCAGGAAAAGTAA
CTCGAAGGAGAGTGTAGATAAGGTTGGGGCAGGGTGTTCCTCTGGTGACG
ACATGCAGCTAGTTAGTAGATGGATAATCTTAGTTTGTGAATCTTCATGG
TCAGAACCAGAATTTCAGCACATTTTAGAAATTCCTTCTCCACCAAAGAA
AGTTCCACTGCAGGAAAAAAAAATTCCTATATTAAAAGCAATCTTTTGAC
TATACTGGATACATTCTTGAAGCTGCTGGAATCTTCTATAGAAATTTTAA
AATTCTACACATAGGAAACTTATGATTCACTTATGAAAAGTGAAGTTGGT
TATGTAAACTGAAGAGCACTAACTTTGGCTATGAGTTGCTTTGTGAATTG
CCTAAAAAACGTTTTTGCATATTTGATGATTGTGCTGGGTGTTGGCCACA
GACTGAGGGAGTCCACTGGCATCCAAAGTTTTGAGCTCCTTCTTCTTTCC
TTCACCTTCTTCTGAGCTGAGACAGATTCTCACAGCCGAGGAGAGGGAAA
ACTGTCACGCTCAACTCAGGCTTGCTGGAAGGTGTTGTGTGCAAGACCTC
GGACCAACTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_n17.b1 MSMg01no506_n17.b1 CHROMAT_FILE:
MSMg01no506_n17.b1 PHD_FILE: MSMg01no506_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:11 2005
         (426 letters)



>mm_chr13_98419140_98419965
          Length = 826

 Score =  791 bits (409), Expect = 0.0
 Identities = 421/425 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   tcaacaggagaatttcatggtcaggaggcaactcggagtaattaaagtccaacacccaat 61
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 626 tcaacaggagaatttcatggtcaggaggcaactaggagtaattaaagtccaacacccaat 567

                                                                       
Query: 62  cctctcctggcacccacaccttgactcatggtcttgtagtccaactttgtgcttagagtt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cctctcctggcacccacaccttgactcatggtcttgtagtccaactttgtgcttagagtt 507

                                                                       
Query: 122 ttcaaaagctcacagtggaattccatggatccatttgtgttgaaagaaccctcagctcag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttcaaaagctcacagtggaattccatggatccatttgtgttgaaagaaccctcagctcag 447

                                                                       
Query: 182 tcccagggcaacacaacaacacactcctccatgaagctccaacagtcttctacaacacca 241
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcccagggcaacacaacaacgcactcctccatgaagctccaacagtcttctacaacacca 387

                                                                       
Query: 242 tactccagacgtggaggctacccccgcagggatgagtgatgcaagaaccttggagaaaca 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tactccagacgtggaggctacccccgcagggatgagtgatgcaagaaccttggagaaaca 327

                                                                       
Query: 302 cccattaaaaacaactcacatctacaactgcccagtgtcccgcctatatgatctccatcc 361
           |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cccaataaaaacaattcacatctacaactgcccagtgtcccgcctatatgatctccatcc 267

                                                                       
Query: 362 ctacttctttctcagttttacagatgaagaaatagtttctggtctagggagagacctctt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctacttctttctcagttttacagatgaagaaatagtttctggtctagggagagacctctt 207

                
Query: 422 ttggc 426
           |||||
Sbjct: 206 ttggc 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no506_n17.g1 MSMg01no506_n17.g1 CHROMAT_FILE:
MSMg01no506_n17.g1 PHD_FILE: MSMg01no506_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:11 2005
         (671 letters)



>mm_chr13_98286160_98287230
          Length = 1071

 Score = 1266 bits (655), Expect = 0.0
 Identities = 667/671 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactggatcaatatttaattttagttgtggaaggtgaggccaagcattcagaaatatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactggatcaatatttaattttagttgtggaaggtgaggccaagcattcagaaatatctt 260

                                                                       
Query: 61  caaatttctttgcataataaaaagatctctcttaatttatttacagtttaattcaggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaatttctttgcataataaaaagatctctcttaatttatttacagtttaattcaggaaa 320

                                                                       
Query: 121 agtaactcgaaggagagtgtagataaggttggggcagggtgttcctctggtgacgacatg 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtaactcgaaggagagtgtagataaggttggggcagggtgttcctctggtgacgacatg 380

                                                                       
Query: 181 cagctagttagtagatggataatcttagtttgtgaatcttcatggtcagaaccagaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagctagttagtagatggataatcttagtttgtgaatcttcatggtcagaaccagaattt 440

                                                                       
Query: 241 cagcacattttagaaattccttctccaccaaagaaagttccactgcaggaaaaaaaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcacattttagaaattccttctccaccaaagaaagttccactgcaggaaaaaaaaatt 500

                                                                       
Query: 301 cctatattaaaagcaatcttttgactatactggatacattcttgaagctgctggaatctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctatattaaaagcaatcttttgactatactggatacattcttgaagctgctggaatctt 560

                                                                       
Query: 361 ctatagaaattttaaaattctacacataggaaacttatgattcacttatgaaaagtgaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctatagaaattttaaaattctacacataggaaacttatgattcacttatgaaaagtgaag 620

                                                                       
Query: 421 ttggttatgtaaactgaagagcactaactttggctatgagttgctttgtgaattgcctaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttggttatgtaaactgaagagcactaactttggctatgagttgctttgtgaattgcctaa 680

                                                                       
Query: 481 aaaacgtttttgcatatttgatgattgtgctgggtgttggccacagactgagggagtcca 540
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 aaaatgtttttgcatatttgatgattgtgctgggtgttggccacagactgagggagccca 740

                                                                       
Query: 541 ctggcatccaaagttttgagctccttcttctttccttcaccttcttctgagctgagacag 600
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctggcatccaaagtgttgagctccttcttctttccttcaccttcttctgagctgagacag 800

                                                                       
Query: 601 attctcacagccgaggagagggaaaactgtcacgctcaactcaggcttgctggaaggtgt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attctcacagccgaggagagggaaaactgtcacgctcaactcaggcttgctggaaggtgt 860

                      
Query: 661 tgtgtgcaaga 671
           |||||||||||
Sbjct: 861 tgtgtgcaaga 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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