BAC Information

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BAC

Clone NameMSMg01-507H08
Chromosome13 (Build37)
Map Location 32,612,495 - 32,613,136
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxq1, LOC100041312, Foxf2, Foxc1, 4930548F15Rik, Gmds, LOC666212
Downstream geneWrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507H08.T7 (MSMg01no507_h08.b1)MSMg01-507H08.TJ (MSMg01no507_h08.g1)
ACCAG581603AG581604
length763768
length of high quality
(start - end)
693 (71 - 763)645 (71 - 715)
definitionCHROMAT_FILE: MSMg01no507_h08.b1 PHD_FILE: MSMg01no507_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:01 2005CHROMAT_FILE: MSMg01no507_h08.g1 PHD_FILE: MSMg01no507_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGNAAATCCGCGG
AATTCAACAACAGATTTCCCAGAAACCCTACAAACTCATGAAAACTGAAC
AACTCAATTCTGAATGACCAGTGGGTCAGTGAAGAAATGAAGAAAGACAT
TAAAGACATCCTAGAATTCAATGAAAATAAAGGTGTAACATACCCAAATG
TATAGGACAGAACGAAAGCAGTGCTAAGAGGAAAGTTCATAGTACTAAGT
GGCTTCACAAAGAAACTGGAGAGATCTCATACTGGCAACTTAAAAGCATA
CCCGAAAGATCTAGAACAAAAAGAATCTAAACACACTGAAGAGGAGCAGT
TTACCTTTTAATTACAAGTCTTCAGGAGGCTCTGATCTCTGTCATAGAAG
CCCAGCAGTGGTGTGGCGTGACTTATTCTCTTTCATTTTCTGTGTTCTTC
CTATACATGCTATCTTATGGCTTCTACAAAGTCATCCTGATAGATCGGAA
CTACTTAGTAGTAAATTTGATTTGCATCTCCTGTTGACTGGTGAAGCTGA
ACATCCTTTTACATGTCTCTGACATATTTGTATTCTTTTCTTATCTTCCC
TTCCCTCCTGTCTTTCTTTCTTCCTTCCTTTCTTCCTTTCTTCCTTCCTT
CCTTCCTTCCTTTCNTTCTTGCTTTCTTGCTTTCTTGCTTCCTTCCTTCC
TTCCTTTCTTCATTTCTTCCTTTCTTCCTTCCTTTCTTTCTTTCCTTCTT
ATTTATTCATTTA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTCGCAAAATAACCCTCAGAACTAACACAATGAATGGGAAACT
TACCTCCAAAAAATTGCCACCTCTCCTCTGACTTGCACACATACACACAC
ACACACACACACACACACACACACACACACACACACAAATTATTCTTCTA
AAACTATGGGTAAGTATGTTTGTTAAAGATCCCTTGTTAAATTTCCTTGT
CATAATGAGAATTACAGGAGATATGGCTCCTAAAGACAATAACGTTAGGG
TTTCAGTGACCTATTATATTACTGCAAATAGAATAGCTAAAGGGACCATG
CTATGGCGTGTTACCCAAAATACAAATGATGATTATTATTACCTTGTAAT
TAAAAGATAACCACACCGCTAAGATGAACATTTGCTAAATCCTCAAGAAC
TTTTTTTTCCTCAGAAAAATTTGAAATTGCTTCTTTTGCTAGGTAAATTT
AAAATGTAAACTTAAAGGATTGATTTTTCAGAGCTGGCCTGTATGAACAG
GCAGTTTAATCAATGTTGAGATGGGTAAATTTTGCTATGAGAATCACAAA
GTTTTCATTCAACATCAATCCATTGCTAGTTATATATTTGTTACAATTGC
TATGAAATATATTAATATTCAATTTGGTATGTATACATGTAATAAAATTA
TCAAGCTAAAACTCTTGTTCACAGAAGTGCAAGGTTATATTTAGAAGCTT
TAGGTTTGTTAAATATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_h08.g1 MSMg01no507_h08.g1 CHROMAT_FILE:
MSMg01no507_h08.g1 PHD_FILE: MSMg01no507_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:01 2005
         (645 letters)



>mm_chr13_32612178_32613223
          Length = 1046

 Score = 1137 bits (588), Expect = 0.0
 Identities = 630/646 (97%), Gaps = 5/646 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctcagaactaacacaatgaatgggaaacttacctccaaaaaattgccacctctcctctg 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 cctcagaactcacacaatgaatgggaaacttacctccaaaaaattgccacctctcctctg 900

                                                                       
Query: 61  acttgcacacatacacacacacacacacacacacacacacacacacacacacacacaaat 120
           ||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 acttgcac----acacacacacacacacacacacacacacacacacacacacacacaaat 844

                                                                       
Query: 121 tattcttctaaaactatgggtaagtatgtttgttaaagatcccttgttaaatttccttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 tattcttctaaaactatgggtaagtatgtttgttaaagatcccttgttaaatttccttgt 784

                                                                       
Query: 181 cataatgagaattacaggagatatggctcctaaagacaataacgttagggtttcagtgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 cataatgagaattacaggagatatggctcctaaagacaataacgttagggtttcagtgac 724

                                                                       
Query: 241 ctattatattactgcaaatagaatagctaaagggaccatgctatggcgtgttacccaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ctattatattactgcaaatagaatagctaaagggaccatgctatggcgtgttacccaaaa 664

                                                                       
Query: 301 tacaaatgatgattattattaccttgtaattaaaagataaccacaccgctaagatgaaca 360
            |||||||||||||||||||||||||||||||||||||||| | || | |||||||||||
Sbjct: 663 gacaaatgatgattattattaccttgtaattaaaagataactaaactgttaagatgaaca 604

                                                                       
Query: 361 tttgctaaatcctcaagaacttttttttcctcagaaaaatttgaaattgcttcttttgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tttgctaaatcctcaagaacttttttttcctcagaaaaatttgaaattgcttcttttgct 544

                                                                       
Query: 421 aggtaaatttaaaatgtaaacttaaaggattgatttttcagagctggcctgtatgaacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 543 aggtaaatttaaaatgtaaacttaaaggattgatttttcagagctggcctgtatgaagag 484

                                                                       
Query: 481 gcagtttaatcaatgttgagatgggtaaattttgctatgagaatcacaaagttttcattc 540
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gcactttaatcaatgttgagatgggtaaattttgctatgagaatcacaaagttttcattc 424

                                                                       
Query: 541 aacatcaatccattgctagttatatattt-gttacaattgctatgaaatatattaatatt 599
           |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct: 423 aacatcaatccattgctagtaatatattttgttacaattgctatgaaatacattaatatt 364

                                                         
Query: 600 caatttggtatgtatacatgtaataaaattatcaagctaaaactct 645
           |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 caatctggtatgtatacatgtaataaaattatcaagctaaaactct 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space:   657860
Effective search space used:   657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)