Query= MSMg01no507_k16.b1 MSMg01no507_k16.b1 CHROMAT_FILE:
MSMg01no507_k16.b1 PHD_FILE: MSMg01no507_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:17 2005
(653 letters)
>mm_chr13_43722770_43723823
Length = 1054
Score = 1234 bits (638), Expect = 0.0
Identities = 650/654 (99%), Gaps = 1/654 (0%)
Strand = Plus / Plus
Query: 1 tctcaaaaccttaactattttacatttatacacaaatttaatatacctgaatttttattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcaaaaccttaactattttacatttatacacaaatttaatatacctgaatttttattt 260
Query: 61 taaggaatcagataattttggggcacatttctgactatggtaagtgaagtcttcctgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaggaatcagataattttggggcacatttctgactatggtaagtgaagtcttcctgaaa 320
Query: 121 attagctctaatttctttgaatattctctcacttacaaaattaatattgtctagacttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attagctctaatttctttgaatattctctcacttacaaaattaatattgtctagacttaa 380
Query: 181 tcaaacactcttaagcatttcaatctaaattaatcgcatgtctaaaaaatctatcacaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaacactcttaagcatttcaatctaaattaatcgcatgtctaaaaaatctatcacaca 440
Query: 241 -ttttaaattataatcacaagaccaagctgtcggcttgtcattaaaaatgtgacaatcat 299
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttaaattagaatcacaagaccaagctgtcggcttgtcattaaaaatgtgacaatcat 500
Query: 300 tcataggctgtattaaagtattaatagacaccagtttcctcttctaaataaaggacttat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcataggctgtattaaagtattaatagacaccagtttcctcttctaaataaaggacttat 560
Query: 360 ttatttttattttgtatgtatgagtgttttgcccgcatgtatgtctatgcactacacata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatttttattttgtatgtatgagtgttttgcccgcatgtatgtctatgcactacacata 620
Query: 420 tgcctgatgtctgaggaggccagaagcattggatcgtctggaactgaagttaaagatggt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcctgatgtctgaggaggccagaagcattggatcgtctggaactgaagttaaagatggt 680
Query: 480 tgtgaaccagcatgtgggtatggggaatcaaacccacatcctctgcaagaacaggaagtg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgaaccagcatgtgggtatggggaatcaaacccacatcctctgcaagaacaggaagtg 740
Query: 540 ctcttaatcgctgagccatctctccaactctgggacctgtttctttcagtgtctctttaa 599
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctcttaaccgctgagccatctctccaactctgggacctgtttctttcagtgtctctttaa 800
Query: 600 taccaaactctctctagagtgtaaagttgcttcctcacttagtgagggagtgaa 653
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttccaaactctctctagagtgtaaagttgcttcctcacttagtgagggagtgaa 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1054
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1044
Effective search space: 671292
Effective search space used: 671292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_k16.g1 MSMg01no507_k16.g1 CHROMAT_FILE:
MSMg01no507_k16.g1 PHD_FILE: MSMg01no507_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:17 2005
(554 letters)
>mm_chr13_43870230_43871182
Length = 953
Score = 820 bits (424), Expect = 0.0
Identities = 468/506 (92%), Gaps = 37/506 (7%)
Strand = Plus / Minus
Query: 49 tcatgcccgcaaatcctagtatttaggagttcagggcaaacctgggctacagagtgaatt 108
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 tcatgcctgcaaatcctagtatttaggagttcagggcaaacctgggctacagagtgaatt 894
Query: 109 ggctggactctgggtcagatcttgtttcaaaacaaactaaagaaagccagtcagcaaaga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 ggctggactctgggtcagatcttgtttcaaaacaaactaaagaaagccagtcagcaaaga 834
Query: 169 caaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa 228
| |||||||||||||||||||||||
Sbjct: 833 c------------------------------------gaaagaaagaaagaaagaaagaa 810
Query: 229 agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaatgtg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaatgtg 750
Query: 289 tacaagcccctggatcaacctcctaggctccaacttgcttcatggtttctcactttctca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tacaagcccctggatcaacctcctaggctccaacttgcttcatggtttctcactttctca 690
Query: 349 tgtgcttctgccaggatgtggttgacccagacaaaggagtcccgaccagagaccagatca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tgtgcttctgccaggatgtggttgacccagacaaaggagtcccgaccagagaccagatca 630
Query: 409 gggggattcccctaatcttggactttcttggactccaaaattgtgagtttcaatgaactg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gggggattcccctaatcttggactttcttggactccaaaattgtgagtttcaatgaactg 570
Query: 469 tccccatcccccttcaaagttaactagcctctgttcactagcaaagtgagtcacgctttt 528
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tcccca-cccccttcaaagttaactagcctctgttcactagcaaagtgagtcacgctttt 511
Query: 529 attttattgcagcaacagaaaagggc 554
||||||||||||||||||||||||||
Sbjct: 510 attttattgcagcaacagaaaagggc 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 126
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 953
Length adjustment: 10
Effective length of query: 544
Effective length of database: 943
Effective search space: 512992
Effective search space used: 512992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
