BAC Information

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BAC

Clone NameMSMg01-510L06
Chromosome13 (Build37)
Map Location 115,151,615 - 115,152,252
singlet/doubletsinglet
Overlap geneNdufs4
Upstream geneBC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik
Downstream geneLOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510L06.T7 (MSMg01no510_l06.b1)MSMg01-510L06.TJ (MSMg01no510_l06.g1)
ACCAG584077AG584078
length715735
length of high quality
(start - end)
638 (78 - 715)643 (78 - 720)
definitionCHROMAT_FILE: MSMg01no510_l06.b1 PHD_FILE: MSMg01no510_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:21 2005CHROMAT_FILE: MSMg01no510_l06.g1 PHD_FILE: MSMg01no510_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCTCTACCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGA
GGCGCGGAATTCAGCTCATCCCCGTGCACTCTATGCTGTCTGTCCAGTGA
AGACATCAGTCCATTTCTCAGAATTCAGCTCACCAAGGTGCACTCTATGC
TGTCTGTCCAGTGAAGACATCAATCCATTTCTCAGAATTCAGCTCACCAA
GGTGCACTCTATGCTGTCTGTCCAGTGAAGACATCAGTCCATTTCTCAGA
ATGTATTCCCACAGCAAGTGACACACAATTGTAAATACACACTTACATGA
AAATCTAACAACCTGTCCAAGGTCTTTATTAGCAAAACTAGAAAAGTCTA
ATGAGGGAAATCATAAAATACCTAAATAATGAAGATATGTTTTATATTCA
TGAGCAGAAATAATTGATATTGTTAAAACATCATTTCTTTGTAAATTATT
CTATAATGAAACAAACTATATCGAAATCCCAGCAAGTTGCTTTCTGGACA
TTAGTAAGCTAGTCCTAATGTTCATATTCAAAGGCTGCCAATACAATGCT
GAAAGAAAATTAACAAAGTCAGAAGACTGATTCTTCCTAATTGTAGAACT
TAAAACATATCTGTATGTGTATACCCAAAAGATAAATAAATCAACATAAC
ACAACTAATAGCCCAGAAACAGACTATTTAAATATAATTGACTGACCTTT
GGAAAAGGAGTAAAG
NTTGCCTCGATGAAGTGGGAGGCCTGGNGGCCGCCTGGCTCTCAAATTTA
GGTGAACTATAGAATTTCCGCGAAATTCACGCAGTTGAATCCTTCTCAAC
AGTCTGTGTTACGGGAACACTTCATTACCACCATTCCCCAGCTGAAGAGT
TCTGAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACA
CTTCATTACCACCGTTCCCCAGCTGAAGAGTTCTGAATTCAGGCTGGATC
CTTCTCAACAGTCTGTTTTACGGGAACCTTTATGACCGTGACCCGCAGTT
CTGGTTCCAGAATGAGGGATCTTTCTTGCGCCGGTGATGGTAACCGTCCC
AGGTTTTCTCGTCCCAGGTCCTCTTGTCCCAGGTCTTCTCGTTCCGGGTT
TCAGCACCAACTCTTACACGCGTTCTCGCGACCGGCCAGGAAGAACACAG
CAAACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGC
AAGAGTGCAAGAGAGCAAGAGTGCAAGAGAGAGAACAAGAACAAGAAAGC
AAGAGAGAAAAAGCAAGAACAAGAGAGAGAGAAAGAATGGCAAAACCCCG
TCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATT
GGCTGCAGCCCATCGGCCCAGTTGTCATCACGAGAAAGGCAGAACACATG
GCGGGAAAACTGCCCCTGCACGTGTGCAGATTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_l06.b1 MSMg01no510_l06.b1 CHROMAT_FILE:
MSMg01no510_l06.b1 PHD_FILE: MSMg01no510_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:21 2005
         (638 letters)



>mm_chr13_115151478_115152515
          Length = 1038

 Score = 1164 bits (602), Expect = 0.0
 Identities = 629/638 (98%), Gaps = 1/638 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctctatgctgtctgtccagtgaagacatcagtccatttctcagaattcagctcaccaagg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ctctatgctgtctgtccagtgaagacatcagtccatttctcagaattcagctcaccaagg 197

                                                                       
Query: 62  tgcactctatgctgtctgtccagtgaagacatcaatccatttctcagaattcagctcacc 121
           ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 198 tgcgctctatgctgtctgtccagtgaagacatcagtccatttctcagaattcagctcacc 257

                                                                       
Query: 122 aaggtgcactctatgctgtctgtccagtgaagacatcagtccatttctcagaatgtattc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaggtgcactctatgctgtctgtccagtgaagacatcagtccatttctcagaatgtattc 317

                                                                       
Query: 182 ccacag-caagtgacacacaattgtaaatacacacttacatgaaaatctaacaacctgtc 240
           ||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 318 ccacagttaagtgacacacaattgtaaataaacacttacatgaaaatctaacaacctgtc 377

                                                                       
Query: 241 caaggtctttattagcaaaactagaaaagtctaatgagggaaatcataaaatacctaaat 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 caaggtctttataagcaaaactagaaaagtctaatgagggaaatcataaaatacctaaat 437

                                                                       
Query: 301 aatgaagatatgttttatattcatgagcagaaataattgatattgttaaaacatcatttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 438 aatgaagatatgttttatattcatgagcagaaataattgatattgttaaaacatcatttt 497

                                                                       
Query: 361 tttgtaaattattctataatgaaacaaactatatcgaaatcccagcaagttgctttctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttgtaaattattctataatgaaacaaactatatcgaaatcccagcaagttgctttctgg 557

                                                                       
Query: 421 acattagtaagctagtcctaatgttcatattcaaaggctgccaatacaatgctgaaagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 acattagtaagctagtcctaatgttcatattcaaaggctgccaatacaatgctgaaagaa 617

                                                                       
Query: 481 aattaacaaagtcagaagactgattcttcctaattgtagaacttaaaacatatctgtatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aattaacaaagtcagaagactgattcttcctaattgtagaacttaaaacatatctgtatg 677

                                                                       
Query: 541 tgtatacccaaaagataaataaatcaacataacacaactaatagcccagaaacagactat 600
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tggatacccaaaagataaataaatcaacataacacaactaatagcccagaaacagactat 737

                                                 
Query: 601 ttaaatataattgactgacctttggaaaaggagtaaag 638
           ||||||||| ||||||||||||||||||||||||||||
Sbjct: 738 ttaaatatagttgactgacctttggaaaaggagtaaag 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)