BAC Information

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BAC

Clone NameMSMg01-510L10
Chromosome13 (Build37)
Map Location 86,152,589 - 86,152,985
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373, LOC675662
Downstream geneCox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510L10.T7 (MSMg01no510_l10.b1)MSMg01-510L10.TJ (MSMg01no510_l10.g1)
ACCAG584085AG584086
length726725
length of high quality
(start - end)
397 (330 - 726)240 (79 - 318)
definitionCHROMAT_FILE: MSMg01no510_l10.b1 PHD_FILE: MSMg01no510_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:22 2005CHROMAT_FILE: MSMg01no510_l10.g1 PHD_FILE: MSMg01no510_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCAACCAATAATTGCGGCTGCTAAANGAATCACTATTTCATACTAGGG
GNGGAANTCAGAAAATACCAAAAACAGGAGAAAGGAAAGAAGAAGTTAGT
TTACTGGAAGAATGTGCCATTTGCACATGAATACAGATTATGTATTTGTG
GACATGGGTTATTTGAAATGAGTTGTGGAAAGGGGACATTGCAATTGGAG
ACACAACCAACGAAATGGGGACAGAAAATCTCGGAGTATATTTGTGAAGT
GTATAATAACTCACTTACAAGAGCTACAAGGTCATATGTTATAAAAGATT
CAGTAACAAATGCCAAGTTTAGTTGNNTTAGCGGAACCCAGTAATAACGA
TTGAGCCCGTGAACAGGAAGCTTGTACACTTACAGGTCTGCATTAGTAAG
ATTAATCTGGCATTAATAGGTTGAATTGACTGGAATAGAAAAAGCTAAAG
AGCAGTAAAAAGGTTATTATGATCAGTCATCAGAAAAGTATGTGAGAAGG
AATCACTGTGATGTAACAGAAAAGACCATTCCAAGAGATTAAGGAAGTCA
AGCCAGTGGAATGTAGTGATTAATTGTAGGTGATTGTAAGTGGATAGAGG
ACATAGAGTGACAATAAGATTTTAAGCTTGACAGATTAGAAAATTATATT
ATTACTAGAAATACATTTTATGGGATCTGTTGAACCTACTTTGAAATTCT
ATTTAGAACTTCACTTCATATTCATG
AAAAAACGATGATAGTGGGAGGCCTGGNGGNCGCCTGGTTCAACACTGGG
GTGAACTATAGAATTTCCGAAGTAATGCTGATCTCTCGAATACTTTTAAC
ATGGAGAGGTGTTGTATTTTGTCAAATGCTTTTCATGCATCTAAGGAGAT
GATCATGTGTTTTTTTTCCCCCTCTTTGAGTTTGTTTATATAGTGAGTTA
CTTTAATGGATATTTGCTTACTAAACCAATCTTGCATCCCTGGGATGAAT
TCTACTTGATCATGGTGAATGATGGCTTTGACATGTTCTTGGATTTGATT
TGCTAGAATTTTATTGATTNATTTTGCATTGATATTCATAAGCGAGTTTA
TTCTGAAGTTCTCTTTTTTGGTTGGGTCCTTGTGTGGTTTAAGTATCAGA
AATTTTGGCTTCATAGAACGACTTAGGTAGTGTTACTTCTGTTTCTATTT
TATGGAATAGTTTGAGGAATATTGGTACCAGGTCTTCTTTGAAAGTCTGG
TAGAACTCTGCACTAAATCAATCTGGCCCTAGGTGTGTGTGTGTGTGTGC
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCNCCCCC
CTCACCTTTCCTTTACTTTTCCCCCCTTTTTCTCTCACTTTTTTTTTTTT
TTTTTCTTCCCCTTCTCATCTTTCTTTTCTACTTTCCCTTTTTTTTTCAT
TTTCTATCTCCTTTTCGTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_l10.b1 MSMg01no510_l10.b1 CHROMAT_FILE:
MSMg01no510_l10.b1 PHD_FILE: MSMg01no510_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:22 2005
         (397 letters)



>mm_chr13_86152389_86153185
          Length = 797

 Score =  700 bits (362), Expect = 0.0
 Identities = 389/398 (97%), Gaps = 2/398 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcggaacccagtaataacgattgagcccgtgaacaggaagcttgtacacttacaggtct 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 597 agcggaacccagtaataacgattgagcccatgaacaggaagcttgtacacttacaggtct 538

                                                                       
Query: 61  gcattagtaagattaatctggcattaataggttgaattgactggaatagaaaaagctaaa 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 537 gcattagtaagattaatctggcattaataggtagaattgactggaatagaaaaagctaaa 478

                                                                       
Query: 121 gagcagtaaaaaggttattatgatcagtcatcagaaaagtatgtgagaaggaatcactgt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 477 gagcagtaaaaaggttattatgatcagtcatcagaaaagtatgtgagaagaaatcactgt 418

                                                                       
Query: 181 gatgtaacagaaaagaccattccaagagattaaggaagtcaagccagtggaatgtagtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gatgtaacagaaaagaccattccaagagattaaggaagtcaagccagtggaatgtagtga 358

                                                                       
Query: 241 ttaattgtaggtgattgtaagtggatagaggacatagagtgacaataagattttaagctt 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ttaattgtaggtgattgtaaatggatagaggacatagagtgacaataagattttaagctt 298

                                                                       
Query: 301 gacagattagaaaattatattatta-ctagaaatacattttatgggatctgttgaaccta 359
           || |||||||||||||||||||||| | |||||||||||||||||||||| |||||||||
Sbjct: 297 gatagattagaaaattatattattatc-agaaatacattttatgggatctattgaaccta 239

                                                 
Query: 360 ctttgaaattctatttagaacttcacttcatattcatg 397
           ||||||||||||||||||||||||||||||||| ||||
Sbjct: 238 ctttgaaattctatttagaacttcacttcatatacatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)