BAC Information

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BAC

Clone NameMSMg01-510P09
Chromosome13 (Build37)
Map Location 34,208,492 - 34,208,799
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a
Downstream geneLOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510P09.T7 (MSMg01no510_p09.b1)MSMg01-510P09.TJ (MSMg01no510_p09.g1)
ACCAG584273AG584274
length730737
length of high quality
(start - end)
314 (328 - 641)308 (325 - 632)
definitionCHROMAT_FILE: MSMg01no510_p09.b1 PHD_FILE: MSMg01no510_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:40 2005CHROMAT_FILE: MSMg01no510_p09.g1 PHD_FILE: MSMg01no510_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACCTATATTTGCGGCGTGAAACGACNCACATTTTCCGATTCGGGCGGAA
NTCNNNGTTTTACAAGATAGAGGNNNNNAANGGGGNNATTTGAATTTCTG
GAGTCCAGCTTCTTGAGCTCTTTGTATATATTGAATATTAATCTCCTATC
AGATTTAGGATTAGTAAAAATCCTTTCCCAATCTGTTGGTGCACTTTTTG
TCTTATTGACAGTGTCTCTGGCCTTACAGAAGCTTTGCAATCTTATTATG
TCCCATTTGTCAATTCTTGATCTTACAGCGCAAGCCATTGCTGTTCTGTT
TAGAAATTTTCCTTCTGATTCATATCNTTGAGGCTTTTCCCTACTTTCTC
CTCTATTAATTTCAGTGTCTCTAGTAGTATGTGGAAGTCTTTGATCCAGT
TAGACTTGAGCTTTGTACAGGAGATAAGAATGGATCAATTCTCATTCTTC
TACATGATAACCACCAGTTGTTGTGCCAGCACCATTTGTTGAAAATGCTT
TTTCCCACTGTATGGTTTTAGCTCCCTTGTCAAAGTTCAAGTGACCATAG
CTGTGTGGATTCATTTCTGGATCTTCAATTTAATTCCATTGATCTATCTG
TCTGTCACTGTACCAGTACCATGCAGTTTTTATCACAATTGCTCTGCAGT
ACAGCTTAATGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATTGTTG
AGAATAGTTTTTGCTATCCTAGGTTCTTTT
ACGATGCAGTGGGAGGTCTGGNGGACGCCCGGTTTTCAAACAGAGGNGAA
NNANAGAAGGTTACAAAAACAGGGACTTGNGACCCACAACCATTATCTCT
GCATCTTCCAGACTGGCTCACCCTAACCCTAACCAGAACATCTTGTCTCT
TGCAGTCCCAACTGTTATGCTTCTGTCTCACTTGCCATTTACTTTAAATT
TTACTTTGACATAGTGATAATTATATGAATGTGCATTAATGTACCCCTAT
CTTCCAGGAGTGTGCAACCTAGCCAGAAAAGCAGACACAAGCCCATACAA
GCAAGGAAAATACCAGGGTAAATACAAAGAAGACATGGACTGTCCCACGC
ACGGGATCTTACAGCCGTTTCTTATAGGAGATGAATCAAACCATGGCTCA
TGAACCATCTGGGGTATGTTGTTATAGCCGGTGCCATGACAGAACCTGAG
CTGTTGCACTGAGTGCAAGTCATGCTGACCTTGTCTTTTTCTGTTTTCTT
TTCTTCTGCTGCTATGGGTGCACACAGGGCCTCGAGATCCACCATCGAGT
TGTGTCTCCTTTATCTATTGTTGGTTTGGCTTCCTCCTAGAAATGTTGGC
TGGGCCCTGGGAGGAAGATAGTGGTTGTTGCCGAGGGCAGACCCTGTATC
TTCTTCCTTGAGTCTGACACATCACCTCAGATTACAGCTTTGAATTCTTT
TGCTGAAAGAGGGAGCTGGCAAAGAATTTTTTGCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_p09.g1 MSMg01no510_p09.g1 CHROMAT_FILE:
MSMg01no510_p09.g1 PHD_FILE: MSMg01no510_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:41 2005
         (308 letters)



>mm_chr13_34208292_34208999
          Length = 708

 Score =  580 bits (300), Expect = e-170
 Identities = 306/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagaagacatggactgtcccacgcacgggatcttacagccgtttcttataggagatga 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 508 caaagaagacatggactgtcccacgcacgggatcttacagctgtttcttataggagatga 449

                                                                       
Query: 61  atcaaaccatggctcatgaaccatctggggtatgttgttatagccggtgccatgacagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atcaaaccatggctcatgaaccatctggggtatgttgttatagccggtgccatgacagaa 389

                                                                       
Query: 121 cctgagctgttgcactgagtgcaagtcatgctgaccttgtctttttctgttttcttttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cctgagctgttgcactgagtgcaagtcatgctgaccttgtctttttctgttttcttttct 329

                                                                       
Query: 181 tctgctgctatgggtgcacacagggcctcgagatccaccatcgagttgtgtctcctttat 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 328 tctgctgctatgggtgcacacagggcctcgagatccaccatcgagctgtgtctcctttat 269

                                                                       
Query: 241 ctattgttggtttggcttcctcctagaaatgttggctgggccctgggaggaagatagtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctattgttggtttggcttcctcctagaaatgttggctgggccctgggaggaagatagtgg 209

                   
Query: 301 ttgttgcc 308
           ||||||||
Sbjct: 208 ttgttgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)