Query= MSMg01no511_c15.b1 MSMg01no511_c15.b1 CHROMAT_FILE:
MSMg01no511_c15.b1 PHD_FILE: MSMg01no511_c15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:57 2005
(609 letters)
>mm_chr13_45849724_45850733
Length = 1010
Score = 1125 bits (582), Expect = 0.0
Identities = 603/610 (98%), Gaps = 1/610 (0%)
Strand = Plus / Minus
Query: 1 gagcataccaatcactaaacataagtccactcctctgtataagccttcagaaacacttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gagcataccaatcactaaacataagtccactcctctgtataagccttcagaaacacttta 751
Query: 61 gacttaatcagagtcaacttagaagttgcttgataacctctgcccatgacctctgacctc 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gacttaatcagagtcaatttagaagttgcttgataacctctgcccatgacctctgacctc 691
Query: 121 tacttgctttcccactcaccccctgctgccactgttctccaaaccctttgggaacaagta 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tacttgctttcccactcactccctgctgccactgttctccaaaccctttgggaacaagta 631
Query: 181 tgtttgttccattgtctctcaagctgatcttcccccagcagtaagtaaggctgcttcctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tgtttgttccattgtctctcaagctgatcttcccccagcagtaagtaaggctgcttcctt 571
Query: 241 atggaaaccttttaatgaactctgggggtaggatgtcagagggaatgctggggtctgtaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 570 atggaaaccttttaatgaactctgggggtaggatgtcagagggaatgctggggcctgtaa 511
Query: 301 taaagcaggagatagattaactgccttcaccagtcctgagtcttgtgagtgtttttccta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 taaagcaggagatagattaactgccttcaccagtcctgagtcttgtgagtgtttttccta 451
Query: 361 gaacaacctttttcctgttgtcagggatactagaggccatcttggctgccccc-tccctc 419
|||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 450 gaacaacctttttcctattgtcagggatactggaggccatcttggctgcccccctccctc 391
Query: 420 tcctacaaatgcagggctctacagcagccttgactatggatatgtgtgttactttcttcc 479
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcctataaatgcagggctctacagcagccttgactatggatatgtgtgttactttcttcc 331
Query: 480 tggttttatttgtctccaaggacagggtgttgggttattctctctggaaattcatgccaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tggttttatttgtctccaaggacagggtgttgggttattctctctggaaattcatgccaa 271
Query: 540 gtctaaaattaaggcaagatggttctttctccagccccactgtccactcagtagtttata 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtctaaaattaaggcaagatggttctttctccagccccactgtccactcagtagtttata 211
Query: 600 taggaatgtt 609
||||||||||
Sbjct: 210 taggaatgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1010
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1000
Effective search space: 599000
Effective search space used: 599000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_c15.g1 MSMg01no511_c15.g1 CHROMAT_FILE:
MSMg01no511_c15.g1 PHD_FILE: MSMg01no511_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:57 2005
(535 letters)
>mm_chr13_45681868_45682802
Length = 935
Score = 998 bits (516), Expect = 0.0
Identities = 531/536 (99%), Gaps = 1/536 (0%)
Strand = Plus / Plus
Query: 1 ttggactggaaagggagaaggcctttatgctcacagagaatgattttgctttctctctcc 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 200 ttggactggaaagggagaaggcctttatcctcacagagaatgattttgctttctctctcc 259
Query: 61 cttcctcctccccccc-tctctccccttcctccttttctcagtccatgccttcatctctt 119
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cttcctcctcccccccctctctccccttcctccttttctcagtccatgccttcatctctt 319
Query: 120 gctccttcatttcctccttccctcttctatctttcacccgacccccacactcttgagaca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gctccttcatttcctccttccctcttctatctttcacccgacccccacactcttgagaca 379
Query: 180 ggggtctgaagcccaggcttaacttgaatttgtgacagtcttactgcttcaccctcctgt 239
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggggtctgaagcccaggcttgacttgaatttgtgacagtcttactgcttcaccctcctgt 439
Query: 240 gagctggtattacagtcatgcaccactatgcccaactattagaagataacttcttggaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagctggtattacagtcatgcaccactatgcccaactattagaagataacttcttggaat 499
Query: 300 agcttaatttgactttctccacgatatatacaggagactcccatcagatacgtgtgaaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agcttaatttgactttctccacgatatatacaggagactcccatcagatacgtgtgaaaa 559
Query: 360 tagcaaatatacaagtgcattttatcaacacacacatttttaaatcttgtttgatagtct 419
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 560 tagcaaatatacaagtgcattttatcaacacacacattttttaatcttgtttgatagtct 619
Query: 420 catttttgcccccacaaaattaggatttctctctcttcgagagttttgcacaatctatat 479
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cattttcgcccccacaaaattaggatttctctctcttcgagagttttgcacaatctatat 679
Query: 480 tatctccatttgccttatgggatggtgggtacgaagatgaaaagcagccataaggc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tatctccatttgccttatgggatggtgggtacgaagatgaaaagcagccataaggc 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
