Query= MSMg01no511_n06.b1 MSMg01no511_n06.b1 CHROMAT_FILE:
MSMg01no511_n06.b1 PHD_FILE: MSMg01no511_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:47 2005
(575 letters)
>mm_chr13_39729243_39730217
Length = 975
Score = 601 bits (311), Expect = e-176
Identities = 347/359 (96%), Gaps = 1/359 (0%)
Strand = Plus / Minus
Query: 217 gaaggccatcccttactttgccaggatctcaccaggaagacaaactcagctgctcatcaa 276
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 975 gaaggccatcccttactttgccaggatctcaccaggaagacaaactcagctgctcagcaa 916
Query: 277 gtagtggcttcttgcaggaagctgcagaggtggcaggacatagacttggcctaggtctga 336
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 915 gtagtggcttcttgcaggaagctgcagaggtggcaggacatagacttggcctaggtctaa 856
Query: 337 agactccaccctaggtgggctagctgattgaggcaaaacaaggtcttgatagagtgcact 396
||||| |||||||||||||||||| || ||||||||||||||||| |||||||| |||||
Sbjct: 855 agactacaccctaggtgggctagccgactgaggcaaaacaaggtc-tgatagagcgcact 797
Query: 397 tgaggctaggggaagggcacaatggtgagtaaatattaccttatctttcattatttatga 456
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 796 taaggctaggggaagggcacaatggtaagtaaatattaccttatctttcattatttatga 737
Query: 457 agcccttccaagtttgacttctggaacatccaaaatgatgaatgtggctgagacattcaa 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 agcccttccaagtttgacttctggaacatccaaaatgatgaatgtggctgagacattcaa 677
Query: 517 tggttagtctccccaaacacagacaatgagtagtcttaacactactcaccgagagatcc 575
||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||
Sbjct: 676 tggttagtctccccaaacacagacaatgagtagccataacactactcaccaagagatcc 618
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_n06.g1 MSMg01no511_n06.g1 CHROMAT_FILE:
MSMg01no511_n06.g1 PHD_FILE: MSMg01no511_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:48 2005
(603 letters)
>mm_chr13_39569554_39570557
Length = 1004
Score = 1112 bits (575), Expect = 0.0
Identities = 597/605 (98%), Gaps = 3/605 (0%)
Strand = Plus / Plus
Query: 1 tttgtttagctctgtaccctatttttaatagggttatttgatttttctggagtccagctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctctgtaccctatttttaatagggttatttgatttttctggagtccagctt 260
Query: 61 cttgagttctttgtatatattggatattagtcctttataggatttaggattggtaaagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttgtatatattggatattagtcctttataggatttaggattggtaaagat 320
Query: 121 cctttcccaatctgttggtggcctttttgtcttattgacagtgctgtaagatcaagaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttcccaatctgttggtggcctttttgtcttattgacagtgctgtaagatcaagaatc 380
Query: 181 aacaagcgggacctcataaaattgcaatgcttctctaagtcaagacactgtcaataaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaagcgggacctcataaaattgcaatgcttctctaagtcaagacactgtcaataaggc 440
Query: 241 agctaggtcttacgtgtgcgtcagtcacaataccctcaagtgaagatatagatgtaaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctaggtcttacgtgtgcgtcagtcacaataccctcaagtgaagatatagatgtaaaaa 500
Query: 301 aa-gagaccctaattcttttatccaggctatcattgcaggatgtgttatcattttattta 359
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 aaagagaccctaattcttttatccaggcaatcattgcaggatgtgttatcattttattta 560
Query: 360 tgctaattattcattagcataaatgaagcacaacttaaaataagcaatggagaaaccaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctaattattcattagcataaatgaagcacaacttaaaataagcaatggagaaaccaag 620
Query: 420 attgctaaacacaaaggtctactttctttggctttttgttgttgttgctgctgtt--gtt 477
||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||
Sbjct: 621 attgctaaacacaaaggtctactttctttggctttttgttgttgttgttgttgttttgtt 680
Query: 478 ttgttttatcaagacagggtttctctgtgtagtcctggctatcctggaacatactctgta 537
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 ttgttttatcaagacagggtttctctgtgtagtcctggctatcctggaacacactctgta 740
Query: 538 ggcctggctggcctcaaacgcagaaatccgcctgcctctgactcccaagtgccgggatta 597
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 ggcctggctggcctcaaacgcagaaatccgcctgcctctgactcccaagtgctgggatta 800
Query: 598 aaggc 602
|||||
Sbjct: 801 aaggc 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1004
Length adjustment: 10
Effective length of query: 593
Effective length of database: 994
Effective search space: 589442
Effective search space used: 589442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
