Query= MSMg01no513_n24.b1 MSMg01no513_n24.b1 CHROMAT_FILE:
MSMg01no513_n24.b1 PHD_FILE: MSMg01no513_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:32 2005
(656 letters)
>mm_chr13_20021634_20022689
Length = 1056
Score = 1145 bits (592), Expect = 0.0
Identities = 636/656 (96%), Gaps = 9/656 (1%)
Strand = Plus / Minus
Query: 1 gtgtagttgaatgttttccttgggctagtgcaggagtgcatgggaagatgtcaagcctgg 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 688 gtgtagttgaatgttttccttgggttagtgcaggagtgcatgggaagatgtcaagcctgg 629
Query: 61 caggatgttttccaacacagacacacatgttctgtgaagtcagattatattgaacaatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 caggatgttttccaacacagacacacatgttctgtgaagtcagattatattgaacaatta 569
Query: 121 gggtggtagttgagtgatctgtagggtgaagccaagattaaaacaggccctgcagggcag 180
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggctggcagttgagtgatctgtagggtgaagccaagattaaaacaggccctgcagggcag 509
Query: 181 agtgataccgttgagggctaattcggtacaggtcaggtgaggccctagggattacaactt 240
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 508 agtgataccgttgagggctaatttggcacaggtcaggtgaggccctagggattacaactt 449
Query: 241 gggggctgcagcagtggttgtcagagggccagaggaggcaggaaggtagagatctatacc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gggggctgcagcagtggttgtcagagggccagaggaggcaggaaggtagagatctatact 389
Query: 301 aatgtccttttctcaatgctcagctccatctgtggcctgatttggaccactgtatggcta 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aatgttcttttctcaatgctcagctccatctgtggcctgatttggaccactgtatggcta 329
Query: 361 ccattgctctgtgtgtgctggaataggctcctgatatcataaagttccaccaaatttgct 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 328 ccattgctctgtgtgtgctggaataggctcctgatatcataaagttccactaaatttgct 269
Query: 421 ggcccaaacaaaacagaagtttacccttgtgcaattctagaacccaaagctaaaggcaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggcccaaacaaaacagaagtttacccttgtgcaattctagaacccaaagctaaaggcaag 209
Query: 481 cctcttgtttgttgttgttgttgttgttgttgttgctgttattgatgctgctcctcagaa 540
|||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 208 cctcttgtttgttgttgttgttgttg---------ctgttattgatgctgctcctcacaa 158
Query: 541 gcatacgattccttgtatcttgtagtctctgggcctgtggcttctcgtgagctttcttga 600
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 157 gcatacgattccttgtatcttgtagtctctgggcctgtggcttcttgtgggctttcttga 98
Query: 601 ctattttaatcccacctccctccatggtcccagtctcatgtcctcttctttgtgtc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 ctattttaatcccacctccctccatggtcccagtctcatgtcctcttctttgtgtc 42
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_n24.g1 MSMg01no513_n24.g1 CHROMAT_FILE:
MSMg01no513_n24.g1 PHD_FILE: MSMg01no513_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:32 2005
(614 letters)
>mm_chr13_19856146_19857155
Length = 1010
Score = 1079 bits (558), Expect = 0.0
Identities = 598/612 (97%), Gaps = 4/612 (0%)
Strand = Plus / Plus
Query: 1 catgtggcaatatcttcctgatccagcctgactctgaggtttgcttttcccttagagaat 60
|||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtggcaatatcttgc--atc-agcctgactctgaggtttgcttttcccttagagaat 257
Query: 61 atcccttcttccagccctagcctccgcatcacttatcattctttccaatgatttcagttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atcccttcttccagccctagcctccgcatcacttatcattctttccaatgatttcagttt 317
Query: 121 aaccttaagttttgggctacccatctgccagacagcaagtgtttgttgacatgtcaggag 180
|||||||||| |||||||| ||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 318 aaccttaagtattgggctagccatctggcagacagtaagtgtttgttgacatgtcaggag 377
Query: 181 gttctgttaaaccacacagtcccaccctgtcctcaagatcgctccagcagtactttcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gttctgttaaaccacacagtcccaccctgtcctcaagatcgctccagcagtactttcttt 437
Query: 241 tcaagtcttactctggtcctttccccaggtctactcccaggatggcctgtgctgagccat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcaagtcttactctggtcctttccccaggtctactcccaggatggcctgtgctgagccat 497
Query: 301 caatttttatagcatattggttgtctctgttagtgttctttatagtgaaacttgctcatc 360
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 498 caatttt-atagcatattggttgtctctgttagtgttcttgatagtgaaacttgctcatc 556
Query: 361 ccacctgtctagaacacacctaccaactaggaacctggccctgagggactctcctagggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccacctgtctagaacacacctaccaactaggaacctggccctgagggactctcctagggc 616
Query: 421 tacctttatatacctccctggacccagcttcttgccgatttataatttcattgctactgt 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 617 tacctttatatacctccctggacccagcttcttgccgatttatattttcattgctactgt 676
Query: 481 gctttattcacagggaatcagaatattgttagactcccagatattgggtatgacctgaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gctttattcacagggaatcagaatattgttagactcccagatattgggtatgacctgaaa 736
Query: 541 caatagtgtgccctcagcagacgtgcatgcgcgcgcgtgcacatacacacacacacacac 600
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 737 cgagagtgtgccctcagcagacgtgcatgcgcgcgcgtgcacatacacacacacacaaac 796
Query: 601 acacacacacac 612
||||||||||||
Sbjct: 797 acacacacacac 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1010
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1000
Effective search space: 604000
Effective search space used: 604000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
