BAC Information

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BAC

Clone NameMSMg01-515H07
Chromosome13 (Build37)
Map Location 64,423,801 - 64,582,572
singlet/doubletdoublet
Overlap geneCtsl, Ccrk, LOC665612, 1190003K10Rik
Upstream geneFancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik
Downstream geneLOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515H07.T7 (MSMg01no515_h07.b1)MSMg01-515H07.TJ (MSMg01no515_h07.g1)
ACCAG587691AG587692
length780782
length of high quality
(start - end)		654 (45 - 698)545 (75 - 619)
definitionCHROMAT_FILE: MSMg01no515_h07.b1 PHD_FILE: MSMg01no515_h07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:46 2005CHROMAT_FILE: MSMg01no515_h07.g1 PHD_FILE: MSMg01no515_h07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,581,923 - 64,582,572)(64,423,801 - 64,424,345)
sequence
CCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTCCTCTTCCTATAAACTTGGGCTTTTTTATTTAGGCACATGCA
ATGAAAGTATAACCGTGCTAAATAGTCTCGTTTGTCTCACCCTTGTCCTT
GCTCACCTCAAAATTGTCTATTGTCTGCCAAGATGACATGTGTCTTAGTC
AGTTCTTTTCTGGTACAGCAAGTGTCGGCCCCAGAATCCTCAGACACATT
CTGGAACTTTGAGCCATCCTCACTTAGCTTCCTGCCTGGCCCTGAACAAG
CTTATGGCATTTACTACTGTAAATAGCAAGCAAGTAGCAAGCATGGGGGT
TGCTTTGCCTCGTGTTCCTTGAGGCAAGGCAGGAGCAAAGGGAGATAGAA
TGTAGAACTCCAGGCAACCAAGGCACATAGGTGGCCAGAGGAAATAAAAG
GCCAAGTTCAAGACACTCTGAGGCAGTCCTGGGCAAGACATGTTGTCTAG
GCTGATTCCTTCTGCGTCTCCTGGAAAACTAACAGCCCTCGTTATGGCCA
CGAGAGCTGTGTGTGGCAGGAAGAGCTGGAGAGACTTCTACCATCATCCA
CAGTGGGATTAAAAAGGCTGTGCCCAGGCCTCTCTCGTGGGCACTTATTC
AACTTACATTCAACATAAAGACTGTNAACTCGTTCTTGGAAAAGCTGAGC
GAATTTCAAAAGAGGATGATCACTAGNAAGGACTTTGGTGAGGACNGAGA
ACCATGGGACTAAACATCAAGATACCTGAC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGATGTTGAAGGAGATGATCCATT
TGCCAGAGGAATTTTTACGTTCTTTACATTGGTAAGTCCCCACCCCTCAC
CTTAATTTCTTCGATGTATTCTCCCGTTTGATTTCTGACCAGAAGGTTTT
CCACATACAGTACATTGAAAGGCTTTTGTTCCTGTGTGGATTCCCTGATG
TCCTCTGAAGGTTGACTTTTGGACAAATGGTTTCCCACATCCACTACATT
CATGTGGTTTCTCTCCGGTGTGCATCCTTTGATGTCCACTGAGAGCTGAC
TTCTGGACAAATGTTTTCTCACATCCATTACATTTACATGGTTTCCCTGC
TGTGTACTGACTTCTGGGAGAAAGCCTTTCCACAGTCATTACATGCAGAT
GGTTTCTCGTCTGTGTGAGTTCTGTGATGTTGGGATGTCCCCTTTTTTTT
TTTTTTTGAGGCAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCA
CTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCT
CCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCAGTGCTGGGATG
TCCTTTCCACAAGTTCATTACAGTTAGGGTTTTATCTCACTGTGAGTTCT
TTGGTGTATTTTGTGTAATGTCTGAAAGGGCTATTGTCATGACCTCCCGA
TGACTTATCTTCATATGAGCCCTGTTATTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_h07.b1 MSMg01no515_h07.b1 CHROMAT_FILE:
MSMg01no515_h07.b1 PHD_FILE: MSMg01no515_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:46 2005
         (654 letters)



>mm_chr13_64581719_64582772
          Length = 1054

 Score = 1251 bits (647), Expect = 0.0
 Identities = 649/650 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttcctcttcctataaacttgggcttttttatttaggcacatgcaatgaaagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 gaattcatttcctcttcctataaacttgggcttttttatttaggcacatgcaatgaaagt 795

                                                                       
Query: 65  ataaccgtgctaaatagtctcgtttgtctcacccttgtccttgctcacctcaaaattgtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ataaccgtgctaaatagtctcgtttgtctcacccttgtccttgctcacctcaaaattgtc 735

                                                                       
Query: 125 tattgtctgccaagatgacatgtgtcttagtcagttcttttctggtacagcaagtgtcgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tattgtctgccaagatgacatgtgtcttagtcagttcttttctggtacagcaagtgtcgg 675

                                                                       
Query: 185 ccccagaatcctcagacacattctggaactttgagccatcctcacttagcttcctgcctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ccccagaatcctcagacacattctggaactttgagccatcctcacttagcttcctgcctg 615

                                                                       
Query: 245 gccctgaacaagcttatggcatttactactgtaaatagcaagcaagtagcaagcatgggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gccctgaacaagcttatggcatttactactgtaaatagcaagcaagtagcaagcatgggg 555

                                                                       
Query: 305 gttgctttgcctcgtgttccttgaggcaaggcaggagcaaagggagatagaatgtagaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gttgctttgcctcgtgttccttgaggcaaggcaggagcaaagggagatagaatgtagaac 495

                                                                       
Query: 365 tccaggcaaccaaggcacataggtggccagaggaaataaaaggccaagttcaagacactc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tccaggcaaccaaggcacataggtggccagaggaaataaaaggccaagttcaagacactc 435

                                                                       
Query: 425 tgaggcagtcctgggcaagacatgttgtctaggctgattccttctgcgtctcctggaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgaggcagtcctgggcaagacatgttgtctaggctgattccttctgcgtctcctggaaaa 375

                                                                       
Query: 485 ctaacagccctcgttatggccacgagagctgtgtgtggcaggaagagctggagagacttc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctaacagccctcgttatggccacgagagctgtgtgtggcaggaagagctggagagacttc 315

                                                                       
Query: 545 taccatcatccacagtgggattaaaaaggctgtgcccaggcctctctcgtgggcacttat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 taccatcatccacagtgggattaaaaaggctgtgcccaggcctctctcgtgggcacttat 255

                                                             
Query: 605 tcaacttacattcaacataaagactgtnaactcgttcttggaaaagctga 654
           ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 254 tcaacttacattcaacataaagactgtaaactcgttcttggaaaagctga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no515_h07.g1 MSMg01no515_h07.g1 CHROMAT_FILE:
MSMg01no515_h07.g1 PHD_FILE: MSMg01no515_h07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:47 2005
         (545 letters)



>mm_chr13_64423601_64424545
          Length = 945

 Score = 1054 bits (545), Expect = 0.0
 Identities = 545/545 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgatgttgaaggagatgatccatttgccagaggaatttttacgttctttacattggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgatgttgaaggagatgatccatttgccagaggaatttttacgttctttacattggta 260

                                                                       
Query: 61  agtccccacccctcaccttaatttcttcgatgtattctcccgtttgatttctgaccagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtccccacccctcaccttaatttcttcgatgtattctcccgtttgatttctgaccagaa 320

                                                                       
Query: 121 ggttttccacatacagtacattgaaaggcttttgttcctgtgtggattccctgatgtcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttttccacatacagtacattgaaaggcttttgttcctgtgtggattccctgatgtcct 380

                                                                       
Query: 181 ctgaaggttgacttttggacaaatggtttcccacatccactacattcatgtggtttctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaaggttgacttttggacaaatggtttcccacatccactacattcatgtggtttctct 440

                                                                       
Query: 241 ccggtgtgcatcctttgatgtccactgagagctgacttctggacaaatgttttctcacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccggtgtgcatcctttgatgtccactgagagctgacttctggacaaatgttttctcacat 500

                                                                       
Query: 301 ccattacatttacatggtttccctgctgtgtactgacttctgggagaaagcctttccaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccattacatttacatggtttccctgctgtgtactgacttctgggagaaagcctttccaca 560

                                                                       
Query: 361 gtcattacatgcagatggtttctcgtctgtgtgagttctgtgatgttgggatgtcccctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcattacatgcagatggtttctcgtctgtgtgagttctgtgatgttgggatgtcccctt 620

                                                                       
Query: 421 tttttttttttttgaggcagggtttctctgtgtagccctggctgtcctggaactcactct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttttttttttttgaggcagggtttctctgtgtagccctggctgtcctggaactcactct 680

                                                                       
Query: 481 gtagaccaggctggccttgaactcagaaatctgcctgcctctgcctcccgagtgctggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtagaccaggctggccttgaactcagaaatctgcctgcctctgcctcccgagtgctggga 740

                
Query: 541 ttaaa 545
           |||||
Sbjct: 741 ttaaa 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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