BAC Information

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BAC

Clone NameMSMg01-515L15
Chromosome13 (Build37)
Map Location 24,058,282 - 24,058,833
singlet/doubletsinglet
Overlap geneScgn
Upstream geneV1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa
Downstream geneLrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515L15.T7 (MSMg01no515_l15.b1)MSMg01-515L15.TJ (MSMg01no515_l15.g1)
ACCAG587897AG587898
length773853
length of high quality
(start - end)		645 (46 - 690)101 (82 - 182)
definitionCHROMAT_FILE: MSMg01no515_l15.b1 PHD_FILE: MSMg01no515_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:10 2005CHROMAT_FILE: MSMg01no515_l15.g1 PHD_FILE: MSMg01no515_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATGAGTTTGAGGCCCGCCTGATCTACAGAGTGAGTTTTAGGACA
GCCAAGGTTACACAGAAAACTCTGTTCGGAAAAAAAAAAAAAACAAATAA
AATAAAGAACTTCTGGTCTGTGCATTTGTCACATCCATGTTCCTTTCTGC
CTTTTAGATGAAGATCTTTGACAAAAATAAAGATGGACGTTTGGATCTTA
ATGACTTGGCAAGGTGAGTGATGCAGAAAAGTGGCAAACTCAGAAGTTCC
TGTGTCAGGGTCTGATGGTAACACACACCTCCTTTGAAATCTGAGAGCCA
CTCTTGCCTGGGGTCTAAGAGTCCAGGTTCATCTTATTAAACCCTCTGCA
GTGCTTTTGAATCACTCTGGGTAACAGATTCTTTCATGAAGATAATCAAA
GCTCCATCCTGCCTAAATGCACAATGCATATATTATATTATGGTATAGTA
TATATATTAAGAATTCATGAATGGGTCATTGGTGGATTTTGCCCTCAGAG
GCTAGGCACTCATAGTCTCACATTGGGATTCCCCTCTAAATCCAAAATCT
AACAAAACAAAAGCAATAATGATGATAGTGATAAGAAAATAATAATAAAT
GAATGAAAGAATCTTGAAGCTATTCACTGACTTTGGGAATGTTAAATTGT
TATTTCAGAGCAGTAGTGAAAACTGATTGAATTTTAGTAGAGCCAACTCT
CTGCTGGCCTTTGAAGGGTGACA

TTTTTACATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCTGAGGGCTAC
ACAGAGAAACCTGGACTACAAAACACACACCCACACCCACACACACAGTG
CGATTGGGCGGGGTGGGGTGGGGGTGGGTGTGTNTTATANANAANAAAAA
TATTTTTTAATTTTATTTTTTTATTTTTAAATATATGTATAAATTTTTTT
TTTATATTTTTTTTTTTTTTTATTTTTTTTATTTTTTTTTTTATTTANAT
ATATTATATTTTATATTATTTTTTTTTTANTTTTTTTTTTAAGTTTTTTT
TTTTTTTTTTTTTTTATGTTTTTTTTTTTTTTTTTATGTTTGTTGTTTTT
ATTTTTTTTTTTTTTTTTCCCCCACCTTTTTTTTTTTTTTTTTCATTATT
TTTTTATTTTGTTTTAATTATTTTTTTTTTTTTAATTTTTTTATTTTTTT
TTTTTTTTTCCTTTCTTCCTTTTTTTTTATTTTTTATTTATTTTTTTTTT
CTATTTTTTTATCTTTTTTTTTTTTTTATCTTTTTTTTTATTTTTACTTT
TTCCTTTCTTTTTTTATTTTATTTTATTTATTTTTTTTTTTTTTTATTTT
CTTGTAATTTATTCTTTTTATTTATTTTATTTTAATTCTTTTTTGTTTTA
TATTTTTGTTTCATTTTTTTTTTTTTATTATTTTTTTATTTTTTTTTTTC
TTTTTTCTTTTTTTTTTTTCTCTTCTTTTTTTTCTTTTAGTTAATGTATC
TTTATTTATTTATTTTATTGTTTTCCTATATTTTATTATTTTTTATTTTT
ATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_l15.b1 MSMg01no515_l15.b1 CHROMAT_FILE:
MSMg01no515_l15.b1 PHD_FILE: MSMg01no515_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:10 2005
         (645 letters)



>mm_chr13_24057987_24059031
          Length = 1045

 Score = 1013 bits (524), Expect = 0.0
 Identities = 545/552 (98%)
 Strand = Plus / Minus

                                                                       
Query: 94  aaaaacaaataaaataaagaacttctggtctgtgcatttgtcacatccatgttcctttct 153
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 847 aaaaacaaataaaataaagaacttctggtctgtgcatttgtcacatccacgttcctttct 788

                                                                       
Query: 154 gccttttagatgaagatctttgacaaaaataaagatggacgtttggatcttaatgacttg 213
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gccttttagatgaagatctttgacaaaaataaagatggacgtttggatcttaatgacttg 728

                                                                       
Query: 214 gcaaggtgagtgatgcagaaaagtggcaaactcagaagttcctgtgtcagggtctgatgg 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gcaaggtgagtgatgcagaaaagtggcaaactcagaagttcctgtgtcagggtctgatgg 668

                                                                       
Query: 274 taacacacacctcctttgaaatctgagagccactcttgcctggggtctaagagtccaggt 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 taacacacacctcctttgaaatctgagagccactcttgcctggggtctaagagtccaggt 608

                                                                       
Query: 334 tcatcttattaaaccctctgcagtgcttttgaatcactctgggtaacagattctttcatg 393
           |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 607 tcatcttattaaaccctctgtagtgcttttgaatcactctgggtagcagattctttcatg 548

                                                                       
Query: 394 aagataatcaaagctccatcctgcctaaatgcacaatgcatatattatattatggtatag 453
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 547 aagataatcaaagctccatcctgcctaaatgcacaatgcatatattatattatagcatag 488

                                                                       
Query: 454 tatatatattaagaattcatgaatgggtcattggtggattttgccctcagaggctaggca 513
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tatatatattaagaattcatgaatgggtcattggtggattttgccctcagaggctaggca 428

                                                                       
Query: 514 ctcatagtctcacattgggattcccctctaaatccaaaatctaacaaaacaaaagcaata 573
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctcatagtctcacattgggattcccctctaaatccaaaatctaacaaaacaaaagcaata 368

                                                                       
Query: 574 atgatgatagtgataagaaaataataataaatgaatgaaagaatcttgaagctattcact 633
           ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 367 atgatgatagtgataagaaaataatgataaataaatgaaagaatcttgaagctattcact 308

                       
Query: 634 gactttgggaat 645
           ||||||||||||
Sbjct: 307 gactttgggaat 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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