NTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCTCATCCAGTGAAAAACTCTGCCTTGAAAAATATC
TGCTATCAACCTCTGGCCTCCACGTGCATAGGAATGAACACACAGGGAGG
TGGGGTGGGGGAGAGATGGGGAGACAGGGAGAAAGGCAGAGAGATACTGA
GGTTGATGCTCAAGCTCCACCCCAGATTGATGGAGCCAGAATGCTGGGCA
CAGGTTCAAATGATTGGTTTTGACAAGGAGCCCCTAATGATGTATTGTTA
CACCCATAGATCAATGCATCCCTCAGCTCTCATCGAAGAAGCTTCTATAT
GTATGTACACTCACTCTCTCACACTCACACACACACACACTCACTCTCTC
ACACTCTCTCCCTATTTCACTTCCACGTAATTCTCCATATGCCTGACTGG
AAACCATAATGCTCATCTTTTTTTTTCTTTTGAATTAATTACTTATTTAC
TGCTAGTACTCTTTACTGTACTATTTTTGTTCTTTATTTGTAGTTGGTTT
CTTACACCTCCCTACTAGGTTAGTCACAATCTTGTTTTTGATTTTTTGTT
TTTCCCTCCCTTATTTTCTTGTTCCTTTTATATTTTTTTTCTTTCCTAAC
AACACTCATGATTGTTATTATTTTACATATCCCTTTTTTTTTTTTCTTTC
CTACTTTCGTCTCTTTTCTCATATGTAATATGCGTTTTTTCCATTTTTAT
TATTTCTTTTATTTGCTCTTTTACTATCTTTTCCTCTGTTATTTCTTN

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCTTCTTCTCCCCAAAT
AGCTCCTGGGAGCTCCTGGAGCATGAATATGTAAGTGTCGAATTCACTAC
AGTTGCATACAGCTTGTCAGCACCCACAACTCGCTTATGTAATAAATCGT
AGTGAGTCTGTACAAAGGCAATGCTACAGTCTCCATCACCTTGCATGCAA
ACTTCCCAGCTCAGGTGAACTAATACTTTAAAGTTAGATTTCATCCCCTA
CTAACGCATAGGATAGGACTGAGTCTGGCTTATTCTGTGGCAGTACGTCA
TTAGGAAATTCTAAGAGGAGGTTAAGATTTGGGTCATCTGCCAATAGTTG
CATAGGTATCAGTCTTTCACCAAAGAGCACCTTTGTGGGTGGGGCTGATG
TGGGGCGTGGCTGGGAGCAAGCCAATGACTCTTCATTTGCATAGCAAGCT
TATTCATCCACTTGAGATGGATTGGCTGGAGAACGAAGCCCCTCCTATCA
AGCCAGGAAAAAATGCTATTCACCTTCACAGGCAATTAGAAACAGTCCCC
CTCTTCAGCTAGGCTACAATGCTGCCAGACCCTCCATGCTGCCGGGTTAA
ATGTGGGAGCGGACTACACAGAGATTCTAGAACCTAGGGACAGCACACTG
ACATGCCTGCCTATACTCTGCAAAGCAAGCAGATGGAGCGACTCCCCAGC
AAACCTCTACACCTGGAAATTCAGGG

Query= MSMg01no516_n09.g1 MSMg01no516_n09.g1 CHROMAT_FILE:
MSMg01no516_n09.g1 PHD_FILE: MSMg01no516_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:43 2005
         (565 letters)



>mm_chr13_46150274_46151237
          Length = 964

 Score = 1023 bits (529), Expect = 0.0
 Identities = 556/565 (98%), Gaps = 1/565 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttccttcttctccccaaatagctcctgggagctcctggagcatgaatatgtaagtgtcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 cttccttcttctccccaaatagctcctgggagctcctggagcatgaatatgtaagtgtcg 705

                                                                       
Query: 61  aattcactacagttgcatacagcttgtcagcacccacaactcgcttatgtaataaatcgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 704 aattcactacagttgcatacagcttgtcagcacccacaactcgcttatgtaataaattgt 645

                                                                       
Query: 121 agtgagtctgtacaaaggcaatgctacagtctccatcaccttgcatgcaaacttcccagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 agtgagtctgtacaaaggcaatgctacagtctccatcaccttgcatgcaaacttcccagc 585

                                                                       
Query: 181 tcaggtgaactaatactttaaagttagatttcatcccctactaacgcataggataggact 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 584 tcaggtgaactaatactttaaagttagatttcatcccctactaatgcataggataggact 525

                                                                       
Query: 241 gagtctggcttattctgtggcagtacgtcattaggaaattctaagaggaggttaagattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gagtctggcttattctgtggcagtacgtcattaggaaattctaagaggaggttaagattt 465

                                                                       
Query: 301 gggtcatctgccaatagttgcataggtatcagtctttcaccaaagagcacctttgtgggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gggtcatctgccaatagttgcataggtatcagtctttcaccaaagagcacctttgtgggt 405

                                                                       
Query: 361 ggggctgatgtggggcgtggctgggagcaagccaatgactcttcatttgcatagcaagct 420
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 404 ggggctgatgtggggcgtggctgggaaaaagccaatgactcttcatttgcatagcaagct 345

                                                                       
Query: 421 tattcatccacttgagatggattggctggagaacgaagcccctcctatcaagccaggaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 344 tattcatccacttgagatggattggctggagaacgaagcccctccgatcaagccaggaaa 285

                                                                       
Query: 481 aaatgctattcaccttcacaggcaattagaaacagtccccctcttcagctaggctacaat 540
            | |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 284 ga-tgctgttcaccttcacaggcaatttgaaacagtccccctcttcagctaggctacaat 226

                                    
Query: 541 gctgccagaccctccatgctgccgg 565
           |||||||||||||||||||||||||
Sbjct: 225 gctgccagaccctccatgctgccgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 964
Length adjustment: 10
Effective length of query: 555
Effective length of database: 954
Effective search space:   529470
Effective search space used:   529470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)