BAC Information

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BAC

Clone NameMSMg01-516N21
Chromosome13 (Build37)
Map Location 64,501,241 - 64,653,012
singlet/doubletdoublet
Overlap geneCcrk, LOC665612, 1190003K10Rik, LOC218298
Upstream geneFancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl
Downstream genePpia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516N21.T7 (MSMg01no516_n21.b1)MSMg01-516N21.TJ (MSMg01no516_n21.g1)
ACCAG588759AG588760
length787792
length of high quality
(start - end)		583 (54 - 636)504 (83 - 586)
definitionCHROMAT_FILE: MSMg01no516_n21.b1 PHD_FILE: MSMg01no516_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:45 2005CHROMAT_FILE: MSMg01no516_n21.g1 PHD_FILE: MSMg01no516_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,652,598 - 64,653,012)(64,501,241 - 64,501,744)
sequence
NNNNNTTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGTGGTAATAATTTCAGTAGCACCCCAAAGAACACTT
CAGGTCAATACCTGAAAAGATCCTTTCCAAAAATGATTCTAAGAATGTAT
CTCTATTTATATGCTGTGGCACCAATGAAAAGTCACAAAGTCTTACTCCC
GATTCCTCAGAAAACAAAGGCAACGGCGTATGTGCAGCCCTTTCCTAACA
ATGTGTAGTCTCAGGAGTTGTGCCGGCTGGTTTTGTGTGTCAACTTGACA
TAGGCTGGAGTTATCACAGAGAAAGGGGCTTCAGTTGGGGAAATGCCTCC
ATGAGATCCAGCTATAAGGCATTTTCTCAATTAGTGATCAAGGGTGGGAG
GGCCCATTGTGGGTGGTGCCATCCCTGGGCTGGTAGTCTTGGGTTTTATA
AGAAAGCAAGCTGAGCAAGCCAGGGGAAACAAGTCAGTGAGCAGCATCCC
TCCATGGCCTCTGCATCAGCTCCTGCCTCCAAGTTCCTGTCCTTTGTGAT
TTCCTGTCATGACTTCCTTTGGTGATGAACAGCAATGTGGAAGTGTAAGC
TGAATAAACCCTTTCCTCCCCAACTGGCTTCTTGGTCATGATGTTTTGTG
CAGGAATAGAAACCCTGACTAAAACAGGCAAAGAGAAGTGGGGTGGGAAG
GGTAAGAAGAGACACACAAGGGAGTGAGACTGATATGACCCCCAGTGGGT
TTGCTGACCTCTAGGATCTTTGCCCTGGAACTACTAA

NNNNNCCCAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGTCCTCTTCTGTTAC
ACAGGATCAGCCTGTAACCATATTCCCATCAGAAGAGAAGATATTTTAAA
GAAAGACACTTGAGGTACTAGGCTACTAAAACATTGAACCTCAAAGAGTT
AATGAATGGCTGAAGTCCTGGAGTCAGTCAGAGGAGGAACTTGCCTCTCA
GGAAGGAAGTTCACACACTTATCAGACTACCTTGGAGAGACTGGAGCCGA
GACAATCATAGGCAAGAATGCTTGACCAAGACTGCTGAGTTGCGTATCTT
CTCTTGGTCTGTTTAAATCTAACCACCATGTTGGTGCCCCAAGATGGACA
TTTTTGTTTCTTCCCAACGTGACTTTCCATGTTGAATACATGTGAAAAGC
CATGTCTGAGGCATGATCCTGGTGTTGGGGAAACAGAGACGGGAGGACTT
CAGAGGGCTTGAGCCGCAGAGTCAGCGAGAGTCACAGTCTCAGAAAATAA
AATCAATATAATAGAGGAGGTACAGATGACATATACACACACAAATAAAA
TCAGTTCCAAAAAGGATGCTTATATATAATTTATATACCTTTTTGTTTTT
AGAACCTCTGGGAAAAAAAGCATGTAACATGAAAAGGGAAGGCGTCTCTA
GCTGCTTCTAGAATTTCGAAGNTCATCACTATTGAGTGTGAGACCCTCGA
AGCTTATAAGTTTAGGGCTGTANGTCAGCAGTCCACCATTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_n21.b1 MSMg01no516_n21.b1 CHROMAT_FILE:
MSMg01no516_n21.b1 PHD_FILE: MSMg01no516_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:45 2005
         (583 letters)



>mm_chr13_64652598_64653580
          Length = 983

 Score =  803 bits (415), Expect = 0.0
 Identities = 415/415 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtggtaataatttcagtagcaccccaaagaacacttcaggtcaatacctgaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gaattcagtggtaataatttcagtagcaccccaaagaacacttcaggtcaatacctgaaa 356

                                                                       
Query: 65  agatcctttccaaaaatgattctaagaatgtatctctatttatatgctgtggcaccaatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 agatcctttccaaaaatgattctaagaatgtatctctatttatatgctgtggcaccaatg 296

                                                                       
Query: 125 aaaagtcacaaagtcttactcccgattcctcagaaaacaaaggcaacggcgtatgtgcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aaaagtcacaaagtcttactcccgattcctcagaaaacaaaggcaacggcgtatgtgcag 236

                                                                       
Query: 185 ccctttcctaacaatgtgtagtctcaggagttgtgccggctggttttgtgtgtcaacttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ccctttcctaacaatgtgtagtctcaggagttgtgccggctggttttgtgtgtcaacttg 176

                                                                       
Query: 245 acataggctggagttatcacagagaaaggggcttcagttggggaaatgcctccatgagat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 acataggctggagttatcacagagaaaggggcttcagttggggaaatgcctccatgagat 116

                                                                       
Query: 305 ccagctataaggcattttctcaattagtgatcaagggtgggagggcccattgtgggtggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ccagctataaggcattttctcaattagtgatcaagggtgggagggcccattgtgggtggt 56

                                                                  
Query: 365 gccatccctgggctggtagtcttgggttttataagaaagcaagctgagcaagcca 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  gccatccctgggctggtagtcttgggttttataagaaagcaagctgagcaagcca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_n21.g1 MSMg01no516_n21.g1 CHROMAT_FILE:
MSMg01no516_n21.g1 PHD_FILE: MSMg01no516_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:45 2005
         (504 letters)



>mm_chr13_64501041_64501944
          Length = 904

 Score =  975 bits (504), Expect = 0.0
 Identities = 504/504 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggtcctcttctgttacacaggatcagcctgtaaccatattcccatcagaagagaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggtcctcttctgttacacaggatcagcctgtaaccatattcccatcagaagagaagat 260

                                                                       
Query: 61  attttaaagaaagacacttgaggtactaggctactaaaacattgaacctcaaagagttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttaaagaaagacacttgaggtactaggctactaaaacattgaacctcaaagagttaa 320

                                                                       
Query: 121 tgaatggctgaagtcctggagtcagtcagaggaggaacttgcctctcaggaaggaagttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaatggctgaagtcctggagtcagtcagaggaggaacttgcctctcaggaaggaagttc 380

                                                                       
Query: 181 acacacttatcagactaccttggagagactggagccgagacaatcataggcaagaatgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacacttatcagactaccttggagagactggagccgagacaatcataggcaagaatgct 440

                                                                       
Query: 241 tgaccaagactgctgagttgcgtatcttctcttggtctgtttaaatctaaccaccatgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaccaagactgctgagttgcgtatcttctcttggtctgtttaaatctaaccaccatgtt 500

                                                                       
Query: 301 ggtgccccaagatggacatttttgtttcttcccaacgtgactttccatgttgaatacatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtgccccaagatggacatttttgtttcttcccaacgtgactttccatgttgaatacatg 560

                                                                       
Query: 361 tgaaaagccatgtctgaggcatgatcctggtgttggggaaacagagacgggaggacttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaaaagccatgtctgaggcatgatcctggtgttggggaaacagagacgggaggacttca 620

                                                                       
Query: 421 gagggcttgagccgcagagtcagcgagagtcacagtctcagaaaataaaatcaatataat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagggcttgagccgcagagtcagcgagagtcacagtctcagaaaataaaatcaatataat 680

                                   
Query: 481 agaggaggtacagatgacatatac 504
           ||||||||||||||||||||||||
Sbjct: 681 agaggaggtacagatgacatatac 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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