Query= MSMg01no517_d15.b1 MSMg01no517_d15.b1 CHROMAT_FILE:
MSMg01no517_d15.b1 PHD_FILE: MSMg01no517_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:14 2005
(626 letters)
>mm_chr13_75336877_75337904
Length = 1028
Score = 1102 bits (570), Expect = 0.0
Identities = 611/626 (97%), Gaps = 6/626 (0%)
Strand = Plus / Minus
Query: 5 gaattctaggggatttctgaagtcttgtg-aaaaaattccaagaaaacaagtc--ttttt 61
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 828 gaattctaggggatctctgaagtcttgtgaaaaaaattccaagaaaacaagtcttttttt 769
Query: 62 tttccttcaatctttccaagttttattcc-aaaaactatatgttgagattaagatgtcta 120
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 768 tttccttcaatcttttcaagttttattccaaaaaactatatgttgagattaagatgtcta 709
Query: 121 taaagatgtccatcattacaataaagcacccaactggacagacatggatccaattcagta 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 708 taaagatgtccatcattacaataaagcacccaactggacagacatgtatccaattcagta 649
Query: 181 taaaatgtcctatttccctggtggccaaggtaaggaagaaaatacaagaaaacacttctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 cgaaatgtcctatttccctggtggccaaggtaaggaagaaaatacaagaaaacacttctg 589
Query: 241 gggtggaaggctaggacagctcctaagtgaattttggtgcctctaaggaattataaaatc 300
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 588 gggtggaaggctaggacagctcctaagtgaa--ttggtgcctctaaggaattataaaatc 531
Query: 301 catgattctgtctatttatccttttctctctgttctttttctttcttctctcgctcagct 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 catgattctgcctatttatccttttctctctgttctttttctttcttctctcgctcagct 471
Query: 361 ttagcttcttcctcttcatgttttttgatctgttccacttccttttgtttgaggactctg 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 470 ttagcttcttcctcttcatgttttttgatctgttccacttccttttgcttgaggactctg 411
Query: 421 atcactgtctttccactctctcttgttagtgtggtaatttccactttttccacctgacag 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 410 atcactgtctttccactctctcttgctagtgtggtaatttccactttttccacctgacag 351
Query: 481 tttactaacatccactgtcttttttatcacctgacaaccagagtgagggctgacttcaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tttactaacatccactgtcttttttatcacctgacaaccagagtgagggctgacttcaga 291
Query: 541 gtcatttctcctttgtaatcttgtttcaacattgacacagctgcagcactgttgtttcca 600
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 290 gtcatttctcctttgtaatcttgtttcaacattgacacagctgcagcactgctgtttcca 231
Query: 601 aggcacttggctttccatcccccata 626
||||||||||||||||||||||||||
Sbjct: 230 aggcacttggctttccatcccccata 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1028
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1018
Effective search space: 627088
Effective search space used: 627088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_d15.g1 MSMg01no517_d15.g1 CHROMAT_FILE:
MSMg01no517_d15.g1 PHD_FILE: MSMg01no517_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:14 2005
(495 letters)
>mm_chr13_75274624_75275518
Length = 895
Score = 919 bits (475), Expect = 0.0
Identities = 490/495 (98%)
Strand = Plus / Plus
Query: 1 tttctggaatatgacaaaacattttgttgccctcacatgcccagcaagctatctctatta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctggaatatgacaaaacattttgttgccctcacatgcccagcaagctatctctattg 260
Query: 61 atcaattacctgaaaacaaaccatgtcttgaaagtagtttttggtttgtattttattaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaattacctgaaaacaaaccatgtcttgaaagtagtttttggtttgtattttattaat 320
Query: 121 tgaattatttattttatatttacttcccagccccatcattgtcccctactctttctaaat 180
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 321 tgaattatttattttatatttacttcccagcccaaccattgtcccctactctttctaaat 380
Query: 181 tcttgacattcataaaatttttgctttgtttcatgatccactgagtttaaccagagctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttgacattcataaaatttttgctttgtttcatgatccactgagtttaaccagagctgt 440
Query: 241 ctatgataatttgtttgaaattatccattggaacttggtgaaggtaatgactttccctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatgataatttgtttgaaattatccattggaacttggtgaaggtaatgactttccctct 500
Query: 301 ccagggttttttagtagccagtaatttatcagggatgatgtcttagtctgggttttattg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagggttttttagtagccagtaatttatcagggatgatgtcttagtctgggttttattg 560
Query: 361 ctgtgaacagacaccatggccaaggcaattcttatagggacagcatttaattggagctgg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 ctgtgaacagacaccatggccaaggcaattcttatagggacagcatttaattggagctag 620
Query: 421 cgtgtagattcataggttcagtacaatatcaccaaggtggcagcatggcagcttccaggc 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 cgtgtagattcataggttcagtacaatatcaccaaggtggcagtatggcagcttccaggc 680
Query: 481 aggcatggtgtaggc 495
|||||||||||||||
Sbjct: 681 aggcatggtgtaggc 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
