BAC Information

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BAC

Clone NameMSMg01-517F12
Chromosome13 (Build37)
Map Location 89,729,367 - 89,837,909
singlet/doubletdoublet
Overlap geneHapln1, Vcan
Upstream geneEdil3, EG667266
Downstream geneLOC100042940, Xrcc4, Tmem167, LOC100043170, LOC624190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517F12.T7 (MSMg01no517_f12.b1)MSMg01-517F12.TJ (MSMg01no517_f12.g1)
ACCAG589118AG589119
length763751
length of high quality
(start - end)		632 (37 - 668)638 (67 - 704)
definitionCHROMAT_FILE: MSMg01no517_f12.b1 PHD_FILE: MSMg01no517_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:23 2005CHROMAT_FILE: MSMg01no517_f12.g1 PHD_FILE: MSMg01no517_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,729,367 - 89,729,994)(89,837,272 - 89,837,909)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGC
ACTGTGTCCTCACACTGTATCATGAGACACATGATCCAGTGATCAGGACA
AAAGTTAGCCATCTTTGCCTGGTGTATAGACACATGTTGGCTAATTGGTT
TCCCTGGATAATCAGTTATTAACCACCACATGTACATACTCTGTGTGGTA
TATCACTTTATGTTCAAAGACTGTCCCATGAGGTATATTGAACAAAATAA
GTCATACCGAATTCACCTGACCTTTTCTACTCTTCACTCAGAAGGCACAT
AGACATCCTGAGAAAAATAAACCCCCAAAGCCATAAGGTATCATGTATGA
AATCTATTAGAGCAAGGATCATTTATTGCCATCAAATGTGTAAACTGTGT
GAGCGGGATGTGGAAGAGAGCCTTCAGTGTATTTTTCAAAGCATTTGAAT
GTTTCCGATGAATGAGGAATGATGTAAACTGATACTGGAGGAGTAAACTG
GAAAGAGACTACCATAGTGTGTTGTCATCCAGGCTTGCATTTTACATTTA
ACCACTGCAAGTGTTAAGTCTGAAGCAAAGATATACTCTATTACCACTGT
CTTATAAAAGACTATGTGGATAACACACTACAATGAATGGCCTACAAGTC
AATGTGAGGTAATCCTTTAGGAGTGTGCTGGTTAGTTTTTGTCACCTTGA
CAAACTAGAATCACCTAGACAGAGACAGCCACTGGTTGAAATTACCTCCA
GCAGACATTTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCACAGAATGTATTTGGATTATACTTGCCCTAACT
CTGCTCAGATCCACTTTGGATACCCAACCCACCCAATTGCATGCCATCTT
TTTACTTTTTAAATTCATGTATTTGTGCTGCTCCAATGTCCTTTGAGTTT
AGAGCTGTCTTTCGGATCATGGTCAGCCTAGCAGGAAGATTAGTTCAGGA
AGCATTTTGAAGTCCAATTGCCCAAATTGCTTGTTTTGAGTGTAGTTCTT
TCTTACTACTTAGGCACTCATCAAGTATCTGTAATTGCTTGAATATGCTG
TGTAGGAAATCAGGTGCTCTGTTAAAAGGGAGTAGAATCTTTTGTGAAGA
AGAGTTTACACTTGGTGATGTCTCCTTAACTCGGGCAAGATGACTGCATC
TAACAATAGCCTTTGCACTTGAGGGAACTATGTTATCCGAGAATAACTGG
GAGCTAAGAAAACCCATGCCTATTTACTATAACCTACCCACCTCTTCAAT
GTGAGGTCAGCAGAAGCAGCCTCCTTATTTACATATGTGTATGAGCCATT
CTGGATGTGAAGTTTGTGAACTGAGAAAAAAGGTGTGCGTTGCTGAGCAT
ACAAAGGCTGTCAGGGGGATACAACTTGCTTGAGAGCTGCTCCAGGTAAG
CTATAGTTAGCCAAGTCAGAAGGAGGCAAGGATCACAGAACACAGTGATC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_f12.b1 MSMg01no517_f12.b1 CHROMAT_FILE:
MSMg01no517_f12.b1 PHD_FILE: MSMg01no517_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:23 2005
         (632 letters)



>mm_chr13_89729163_89730194
          Length = 1032

 Score = 1160 bits (600), Expect = 0.0
 Identities = 621/628 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgcactgtgtcctcacactgtatcatgagacacatgatccagtgatcaggaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgcactgtgtcctcacactgtatcatgagacacatgatccagtgatcaggaca 264

                                                                       
Query: 65  aaagttagccatctttgcctggtgtatagacacatgttggctaattggtttccctggata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagttagccatctttgcctggtgtatagacacatgttggctaattggtttccctggata 324

                                                                       
Query: 125 atcagttattaaccaccacatgtacatactctgtgtggtatatcactttatgttcaaaga 184
           |||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| |
Sbjct: 325 atcagttattaatcaccacaggtatatactctgtgtggtatatcactttatgttcaaaaa 384

                                                                       
Query: 185 ctgtcccatgaggtatattgaacaaaataagtcataccgaattcacctgaccttttctac 244
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgtcccatgaggaatattgaacaaaataagtcataccgaattcacctgaccttttctac 444

                                                                       
Query: 245 tcttcactcagaaggcacatagacatcctgagaaaaataaacccccaaagccataaggta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcttcactcagaaggcacatagacatcctgagaaaaataaacccccaaagccataaggta 504

                                                                       
Query: 305 tcatgtatgaaatctattagagcaaggatcatttattgccatcaaatgtgtaaactgtgt 364
           || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcgtgtatgaaatcttttagagcaaggatcatttattgccatcaaatgtgtaaactgtgt 564

                                                                       
Query: 365 gagcgggatgtggaagagagccttcagtgtatttttcaaagcatttgaatgtttccgatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagcgggatgtggaagagagccttcagtgtatttttcaaagcatttgaatgtttccgatg 624

                                                                       
Query: 425 aatgaggaatgatgtaaactgatactggaggagtaaactggaaagagactaccatagtgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatgaggaatgatgtaaactgatactggaggagtaaactggaaagagactaccatagtgt 684

                                                                       
Query: 485 gttgtcatccaggcttgcattttacatttaaccactgcaagtgttaagtctgaagcaaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gttgtcatccaggcttgcattttacatttaaccactgcaagtgttaagtctgaagcaaag 744

                                                                       
Query: 545 atatactctattaccactgtcttataaaagactatgtggataacacactacaatgaatgg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atatactctattaccactgtcttataaaagactatgtggataacacactacaatgaatgg 804

                                       
Query: 605 cctacaagtcaatgtgaggtaatccttt 632
           ||||||||||||||||||||||||||||
Sbjct: 805 cctacaagtcaatgtgaggtaatccttt 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no517_f12.g1 MSMg01no517_f12.g1 CHROMAT_FILE:
MSMg01no517_f12.g1 PHD_FILE: MSMg01no517_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:23 2005
         (638 letters)



>mm_chr13_89837072_89838109
          Length = 1038

 Score = 1203 bits (622), Expect = 0.0
 Identities = 634/638 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagaatgtatttggattatacttgccctaactctgctcagatccactttggataccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 cacagaatgtatttggattatacttgccctaactctgctcagatccactttggataccca 779

                                                                       
Query: 61  acccacccaattgcatgccatctttttactttttaaattcatgtatttgtgctgctccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 acccacccaattgcatgccatctttttactttttaaattcatgtatttgtgctgctccaa 719

                                                                       
Query: 121 tgtcctttgagtttagagctgtctttcggatcatggtcagcctagcaggaagattagttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tgtcctttgagtttagagctgtctttcggatcatggtcagcctagcaggaagattagttc 659

                                                                       
Query: 181 aggaagcattttgaagtccaattgcccaaattgcttgttttgagtgtagttctttcttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aggaagcattttgaagtccaattgcccaaattgcttgttttgagtgtagttctttcttac 599

                                                                       
Query: 241 tacttaggcactcatcaagtatctgtaattgcttgaatatgctgtgtaggaaatcaggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tacttaggcactcatcaagtatctgtaattgcttgaatatgctgtgtaggaaatcaggtg 539

                                                                       
Query: 301 ctctgttaaaagggagtagaatcttttgtgaagaagagtttacacttggtgatgtctcct 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 538 ctctgttaaaagggagtagaatcttttgtgaagaagagtttatacttggtgatgtctcct 479

                                                                       
Query: 361 taactcgggcaagatgactgcatctaacaatagcctttgcacttgagggaactatgttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 taactcgggcaagatgactgcatctaacaatagcctttgcacttgagggaactatgttat 419

                                                                       
Query: 421 ccgagaataactgggagctaagaaaacccatgcctatttactataacctacccacctctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ccgagaataactgggagctaagaaaacccatgcctatttactataacctacccacctctt 359

                                                                       
Query: 481 caatgtgaggtcagcagaagcagcctccttatttacatatgtgtatgagccattctggat 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 358 caatgtgaggtcagcagaagcagcctccttacttacatatgtgtatgagccattctggat 299

                                                                       
Query: 541 gtgaagtttgtgaactgagaaaaaaggtgtgcgttgctgagcatacaaaggctgtcaggg 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 298 gtgaagtttgtgaactgagaaaaaaggtgtgcgttgctgagcatacaaaggcagtcaggg 239

                                                 
Query: 601 ggatacaacttgcttgagagctgctccaggtaagctat 638
           ||| ||||||||||||||||||||||||||||||||||
Sbjct: 238 ggacacaacttgcttgagagctgctccaggtaagctat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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