Query= MSMg01no518_e13.b1 MSMg01no518_e13.b1 CHROMAT_FILE:
MSMg01no518_e13.b1 PHD_FILE: MSMg01no518_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:38 2005
(707 letters)
>mm_chr13_105131826_105132932
Length = 1107
Score = 1321 bits (683), Expect = 0.0
Identities = 698/703 (99%)
Strand = Plus / Minus
Query: 4 ggaattcaagacacactcttgattcagcttgcctttctagaattatttattactccccca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 ggaattcaagacacactcttgattcagcttgcctttctagaattatttattactccccca 847
Query: 64 aacctatgtctacttctacagaatgtattcactatacattcaccactacctaaaagattt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 aacctatgtctacttctacagaatgtattcactatacattcaccactacctaaaagattt 787
Query: 124 agaatttctctatatccacaaagagttcattaaaaactcttctcccatttcttctgtaaa 183
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 786 agaatttctctatatccacaaagagttcattaaaaactcttcccccatttcttctgtaaa 727
Query: 184 attctagatatctattcagtacacttcaaataccttatccttcataaagcaggaagtaac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 attctagatatctattcagtacacttcaaataccttatccttcataaagcaggaagtaac 667
Query: 244 acactcctcactactactagagcaagcatgtgcttattgactttcttatactatactaac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 acactcctcactactactagagcaagcatgtgcttattgactttcttatactatactaac 607
Query: 304 catcatcagtatttaaagaatataaaataataaccagacaaagatgaaaagtaggacagg 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 606 catcatcagtatttaaagaatataaaataataaccagacaaagatgaaaagtaggagagg 547
Query: 364 agaaggaacatgttaaataaaacaacaaaaccaatacaataattttacattgatttttga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 agaaggaacatgttaaataaaacaacaaaaccaatacaataattttacattgatttttga 487
Query: 424 aaaaaatctgcttatttctatgtatgaatgtggtaatgaacttgttaatttcatagttta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aaaaaatctgcttatttctatgtatgaatgtggtaatgaacttgttaatttcatagttta 427
Query: 484 tacaaatacctgcatgtcattgtacacagaacaggaatataagtttgcttgccagttata 543
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 426 taccaatacctgcatgtcattgtacacagaacaggtatataagtttgcttgccagttata 367
Query: 544 ccttactaaggcgttagaagagcaaaaacaattagtcaatttgttacagtcattgtgaaa 603
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ccttactaaggctttagaagagcaaaaacaattagtcaatttgttacagtcattgtgaaa 307
Query: 604 tacaaaggcaaaatggaacaataaaaacagcactatcgaatttgtaacaagttcccatcc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaaaggcaaaatggaacaataaaaacagcactatcgaatttgtaacaagttcccatcc 247
Query: 664 tctctcccttcacgcatggacagctcaccaccacacacactgt 706
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tctctcccttcacgcatggacagctcaccaccacacacactgt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space: 764609
Effective search space used: 764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no518_e13.g1 MSMg01no518_e13.g1 CHROMAT_FILE:
MSMg01no518_e13.g1 PHD_FILE: MSMg01no518_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:38 2005
(588 letters)
>mm_chr13_104986546_104987533
Length = 988
Score = 1123 bits (581), Expect = 0.0
Identities = 587/589 (99%), Gaps = 1/589 (0%)
Strand = Plus / Plus
Query: 1 tttgtttagctttgtaccccatttaaaaaaaaaa-gatttatttattatatgtaagtaca 59
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 200 tttgtttagctttgtaccccatttaaaaaaaaaaagatttatttattatatgtaagtaca 259
Query: 60 ctgtagctgtcttcagacactccagagagggcatcagattttattacggttggttatgag 119
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 260 ctgtagctgtcttcagacactccagagagggcatcagattttgttacggttggttatgag 319
Query: 120 ccaccatgtggttgctgggatttgaactcaggacctttggaagagcagtcggcgctctta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccaccatgtggttgctgggatttgaactcaggacctttggaagagcagtcggcgctctta 379
Query: 180 accactgagccatctcgccagccccctgtaccccattttttaatagggttatttggttct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 accactgagccatctcgccagccccctgtaccccattttttaatagggttatttggttct 439
Query: 240 ctggagtctaacttcttgagttctttgcatattttggatattagcgatgtaggcttggta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctggagtctaacttcttgagttctttgcatattttggatattagcgatgtaggcttggta 499
Query: 300 aagatcttttcccaatctgctggttgccattttgtcctgttgacagtgtcctttgcctta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagatcttttcccaatctgctggttgccattttgtcctgttgacagtgtcctttgcctta 559
Query: 360 cagaagcttagcaattttatgaagtcccatttgtctattgttgatcttacagcataagcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cagaagcttagcaattttatgaagtcccatttgtctattgttgatcttacagcataagcc 619
Query: 420 attggtgttctgttcagaaacttttctcctgtgcccatgtgttcgagggacatagcaatt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 attggtgttctgttcagaaacttttctcctgtgcccatgtgttcgagggacatagcaatt 679
Query: 480 tcttacagacaactgttcaccctattgtaatttattagcacagtataaaaaatgttatta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcttacagacaactgttcaccctattgtaatttattagcacagtataaaaaatgttatta 739
Query: 540 agagaagattcagttgtggatttgaacaaataaaagtgggtatatggct 588
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agagaagattcagttgtggatttgaacaaataaaagtgggtatatggct 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
