BAC Information

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BAC

Clone NameMSMg01-519I15
Chromosome13 (Build37)
Map Location 20,231,875 - 20,232,253
singlet/doubletsinglet
Overlap genenone
Upstream geneAmph, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519I15.T7 (MSMg01no519_i15.b1)MSMg01-519I15.TJ (MSMg01no519_i15.g1)
ACCAG590787AG590788
length750741
length of high quality
(start - end)		561 (35 - 595)232 (65 - 296)
definitionCHROMAT_FILE: MSMg01no519_i15.b1 PHD_FILE: MSMg01no519_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:17 2005CHROMAT_FILE: MSMg01no519_i15.g1 PHD_FILE: MSMg01no519_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTAAA
TGCTCTCCAGGTCTAGAACTCATGGTGGAAAACCACCAGGGCCAAGACTC
ACACATTCAAGAGGAAAATGCAAAGTGACTGTGCACCAACACAGGTTCCT
CCTCTACTTAACACCAAATGCCTGTCCAGCCCAGGCAGAGGGAAAGCCCA
GTACAGCAGCTTCCTCCATAGGCTCCACCCCCATTGACTCAACCAGCTGC
TGATTGTAGTATGTGGGTTTAAAACTGCGACTGTGCTGAACTTGTAAAAA
AAAAAAAATCCTATCATTACTCTCTAAATTATACAGTGTAATAACTATTT
ACATAGTATTTGCATTGCATTAGGAGTTACAAGTCATGTAGAGATGATTT
AAAGAGTCCCAGAGGGTGTGGATAGGTTACATGCAAATTCTGCACCATTT
CTAGGCAGACACTTGAGCATCCAAAGCATTCGCTATTGTGTGAGTATCCT
GGAAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTGTCTCTCTCTCTCTCTAACACACACACACACACACACACAT
ACACACACATTTTTTGATTTATGCAAAATATCAATAAAGGTCTTCTACTC
TTTTTCTCCGGTAGATGTTCGCCATCCTTTCAATTATTTTGGAACAGGCA
GGTATTGGGAATGTAATTTTTATACTCCACTATATTCATTGCTTTGTTTT


GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACCAGAATACTCCAAAAACTCATAAGTATAGCAAAC
CAACAGAACCCAAAATTTAACATAGAAAATCAGTAACTTTCTTTTTAAAA
AAGAGATTTATTTATTTTATATTTATATGTATAAATATATTATATTTATT
TTATATTATTATAATTATTATAAATTATTATTATAAATATATTATATTTA
TATATTTATTTATATATTTATAAATATATTATATTTATTTATTTTATGGT
GAGGGATTTAGTGTTGGAAATTTGAAATATCTATTTATAGGAGTTAGGAT
GTGAGTTTCTATGTATAAGTGAGGGATACCGGTGGTTAGGAGATAGGTAG
AGCGCTTGGGGGATAAGGGAGGAACGGGGGGAGCCGGGTATAGTGTGGGC
GCGGTGGGATGGCGAGGCGGAGGGGGGGTCGGAGGAGCCAGGGGAATGGC
GAGGTGGAAGGGATGGAGACCGGGAGGTGGCGACGGCTAGGCGGTCGCGA
GGCCGGCAGGCGCGACTATTCGGGAGAGGCGGNACGGGGGATAGNTTTCC
TGGCCGCGGCGCGGGGGGTGCGGCAGGGGGCGGACGGGGTGGGGGGGGGG
GGGTGGGGTCCTGGGCGGTCGGCGCGGGGAGGGTCGGGAGGTTTGCGGGG
GGGGGGGTGGGGGCGTGGGGTGGGGTTGGGGGCGGGGGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_i15.b1 MSMg01no519_i15.b1 CHROMAT_FILE:
MSMg01no519_i15.b1 PHD_FILE: MSMg01no519_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:17 2005
         (561 letters)



>mm_chr13_20231875_20232834
          Length = 960

 Score =  714 bits (369), Expect = 0.0
 Identities = 378/381 (99%), Gaps = 2/381 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtaaatgctctccaggtctagaactcatggtggaaaaccaccagggccaagac 64
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 379 gaattctgtaaatgct-tccaggtctagaactcatggtggaaaaccaccagggccaagtc 321

                                                                       
Query: 65  tcacacattcaagaggaaaatgcaaagtgactgtgcaccaacacaggttcctcctctact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcacacattcaagaggaaaatgcaaagtgactgtgcaccaacacaggttcctcctctact 261

                                                                       
Query: 125 taacaccaaatgcctgtccagcccaggcagagggaaagcccagtacagcagcttcctcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taacaccaaatgcctgtccagcccaggcagagggaaagcccagtacagcagcttcctcca 201

                                                                       
Query: 185 taggctccacccccattgactcaaccagctgctgattgtagtatgtgggtttaaaactgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 taggctccacccccattgactcaaccagctgctgattgtagtatgtgggtttaaaactgc 141

                                                                       
Query: 245 gactgtgctgaacttgtaaaaaaaaaaaaatcctatcattactctctaaattatacagtg 304
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 gactgtgctgaacttgt-aaaaaaaaaaaatcctatcattactctctaaattatacagtg 82

                                                                       
Query: 305 taataactatttacatagtatttgcattgcattaggagttacaagtcatgtagagatgat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  taataactatttacatagtatttgcattgcattaggagttacaagtcatgtagagatgat 22

                                
Query: 365 ttaaagagtcccagagggtgt 385
           |||||||||||||||||||||
Sbjct: 21  ttaaagagtcccagagggtgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 960
Length adjustment: 10
Effective length of query: 551
Effective length of database: 950
Effective search space:   523450
Effective search space used:   523450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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