BAC Information

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BAC

Clone NameMSMg01-520L12
Chromosome13 (Build37)
Map Location 41,874,832 - 42,042,974
singlet/doubletdoublet
Overlap gene9530008L14Rik
Upstream geneEG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231
Downstream geneLOC100039272, Hivep1, Edn1, Hn1-ps4, Phactr1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520L12.T7 (MSMg01no520_l12.b1)MSMg01-520L12.TJ (MSMg01no520_l12.g1)
ACCAG591684AG591685
length770756
length of high quality
(start - end)		633 (49 - 681)669 (77 - 745)
definitionCHROMAT_FILE: MSMg01no520_l12.b1 PHD_FILE: MSMg01no520_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:50 2005CHROMAT_FILE: MSMg01no520_l12.g1 PHD_FILE: MSMg01no520_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,042,346 - 42,042,974)(41,874,832 - 41,875,500)
sequence
TGAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATGGCACAATGTAGCAGAAATGGGTATGAGTATTTGACTTTG
TCTCTGTCTCTGTCTCTTTCTGTGTGTATGTTTCCTGTGTGTGTGTGTGC
TTGCATGCACGCACATGTGAGTGCATGTATAAGTTCCACCCCACAAGTTA
ATTCCCCTCTTGGGTGTCCCTCTTCCCATCAGCACTCTCCTCTCAGGTCC
TCCTACTTCTTGGACTTTGTCTTTGCCAAGGGTCTCATCCATTCTACCAT
CCTCCCCTGAGTTTACTGGGCATTGTTCGTGTGTGCCCTCTTTTGCCAAG
TAAAATGGTGTAATCCAACCCTTGTGGAAGAGTTAACTAACTAGAGTGGA
AGGCCACCAGTGTATAAGGATACCTATAATAACAAAAAGCATTGTTCTTG
GGCACAAGTTATTAATTTGTCTGCTATTGAAATTTGAACATAACATTAAA
TATTGCATATTGGAAAATCATACCTTTCCGCCAATGTTTGTGTACAGCCC
TATCCTGACAGTGTTTAGAAGATCTCTTTTTTATTATAGAACTACGCCCA
AATGATTTCCCTCTATCCTGATTCACTAGTACTATAGTCTCTGATAAGGG
AACTCTGTATGGTCATCATTGCCATCATGGGGCTGAAAAGAGCCCCTCCC
TNNCCTCCCCTCTTTNNTNNNTNCNTNNNTNTNNTCNAGNTTCCCTCCCC
CCTCCCCCCCTCTCTATGTG

NCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATCTTTCTTATATGGAAACTCAG
GGTGGAGTAGATGTTTAGGATATCCATAGCTCTGAGTCTATGGATGTCCC
TAGCCTGTGCTTTGTGAGCAGCTATATCATTCATTTTTGAGAATGGGGGC
CGAGCCATTGTGGGTTATTCTGGGGACTCCCTACCCTTTCCGCTCCTGAC
CCCCAGGTACCAACACCCCCAAACACAGCAGAGTCTGATTCCTGATCAAA
CAGTGACTGATCTAAATATCGTCTATATCTAGAAGGAACTAAGGCGTCTG
TCTGCTCTGCACAGACACCTGCCTCTCTTCCAGCCTTTCCTCTGCAGTAG
TTGGAGGGATCCAGCTTCTATTAAGAGTCATTAACAGGTTCATTATGCTG
GCCATTGAGCTGACAGATTTTATTAACCTCGCCCACAACCAGAAGCTCCC
TGTTGTCCGCACTAATGATCATTGGGAACAGAATTCCTGTGGAATAGTGC
AGTATGTTTGCATTAGGAGTAAATGAGTTCATGGTGATTAATGCTTTTAC
AACCAACAACTTGGGAATGCATGGCTGGTCACCTCTACCGAGGTGCCTGC
CCCTTTGCAAGTGACATTCAATTGGATTTCCAAATGAACTCTCCCCTGAT
GGCTTCTCGGAAAATTCACTTCCGTGATACCATTAGCGATGGTCCATAGA
TTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_l12.b1 MSMg01no520_l12.b1 CHROMAT_FILE:
MSMg01no520_l12.b1 PHD_FILE: MSMg01no520_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:50 2005
         (633 letters)



>mm_chr13_42042069_42043101
          Length = 1033

 Score = 1185 bits (613), Expect = 0.0
 Identities = 625/629 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatggcacaatgtagcagaaatgggtatgagtatttgactttgtctctgtctctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gaattcatggcacaatgtagcagaaatgggtatgagtatttgactttgtctctgtctctg 847

                                                                       
Query: 65  tctctttctgtgtgtatgtttcctgtgtgtgtgtgtgcttgcatgcacgcacatgtgagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 tctctttctgtgtgtatgtttcctgtgtgtgtgtgtgcttgcatgcacgcacatgtgagt 787

                                                                       
Query: 125 gcatgtataagttccaccccacaagttaattcccctcttgggtgtccctcttcccatcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 gcatgtataagttccaccccacaagttaattcccctcttgggtgtccctcttcccatcag 727

                                                                       
Query: 185 cactctcctctcaggtcctcctacttcttggactttgtctttgccaagggtctcatccat 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 cactctcctctcagatcctcctacttcttggactttgtctttgccaagggtctcatccat 667

                                                                       
Query: 245 tctaccatcctcccctgagtttactgggcattgttcgtgtgtgccctcttttgccaagta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tctaccatcctcccctgagtttactgggcattgttcgtgtgtgccctcttttgccaagta 607

                                                                       
Query: 305 aaatggtgtaatccaacccttgtggaagagttaactaactagagtggaaggccaccagtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aaatggtgtaatccaacccttgtggaagagttaactaactagagtggaaggccaccagtg 547

                                                                       
Query: 365 tataaggatacctataataacaaaaagcattgttcttgggcacaagttattaatttgtct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tataaggatacctataataacaaaaagcattgttcttgggcacaagttattaatttgtct 487

                                                                       
Query: 425 gctattgaaatttgaacataacattaaatattgcatattggaaaatcatacctttccgcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gctattgaaatttgaacataacattaaatattgcatattggaaaatcatacctttccgcc 427

                                                                       
Query: 485 aatgtttgtgtacagccctatcctgacagtgtttagaagatctcttttttattatagaac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aatgtttgtgtacagccctatcctgacagtgtttagaagatctcttttttattatagaac 367

                                                                       
Query: 545 tacgcccaaatgatttccctctatcctgattcactagtactatagtctctgataagggaa 604
           ||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 366 tatacccaaatgatttccctctatcctgattcactagtactctagtctctgataagggaa 307

                                        
Query: 605 ctctgtatggtcatcattgccatcatggg 633
           |||||||||||||||||||||||||||||
Sbjct: 306 ctctgtatggtcatcattgccatcatggg 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no520_l12.g1 MSMg01no520_l12.g1 CHROMAT_FILE:
MSMg01no520_l12.g1 PHD_FILE: MSMg01no520_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:51 2005
         (669 letters)



>mm_chr13_41874632_41875700
          Length = 1069

 Score = 1263 bits (653), Expect = 0.0
 Identities = 665/669 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatctttcttatatggaaactcagggtggagtagatgtttaggatatccatagctctgag 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tatctttcttatatggaaactcagggtggagtagatgtttaagatatccatagctctgag 260

                                                                       
Query: 61  tctatggatgtccctagcctgtgctttgtgagcagctatatcattcatttttgagaatgg 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 tctatggatgtccctagcctgtgctttgtgagcagctatagcattcatttttgagaatgg 320

                                                                       
Query: 121 gggccgagccattgtgggttattctggggactccctaccctttccgctcctgacccccag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 gggccgagccattgtgggttattctggggactccctaccctttccgctcccgacccccag 380

                                                                       
Query: 181 gtaccaacacccccaaacacagcagagtctgattcctgatcaaacagtgactgatctaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaccaacacccccaaacacagcagagtctgattcctgatcaaacagtgactgatctaaa 440

                                                                       
Query: 241 tatcgtctatatctagaaggaactaaggcgtctgtctgctctgcacagacacctgcctct 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 tatcgtctatatctagaaggaactaaggcatctgtctgctctgcacagacacctgcctct 500

                                                                       
Query: 301 cttccagcctttcctctgcagtagttggagggatccagcttctattaagagtcattaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttccagcctttcctctgcagtagttggagggatccagcttctattaagagtcattaaca 560

                                                                       
Query: 361 ggttcattatgctggccattgagctgacagattttattaacctcgcccacaaccagaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggttcattatgctggccattgagctgacagattttattaacctcgcccacaaccagaagc 620

                                                                       
Query: 421 tccctgttgtccgcactaatgatcattgggaacagaattcctgtggaatagtgcagtatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccctgttgtccgcactaatgatcattgggaacagaattcctgtggaatagtgcagtatg 680

                                                                       
Query: 481 tttgcattaggagtaaatgagttcatggtgattaatgcttttacaaccaacaacttggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttgcattaggagtaaatgagttcatggtgattaatgcttttacaaccaacaacttggga 740

                                                                       
Query: 541 atgcatggctggtcacctctaccgaggtgcctgcccctttgcaagtgacattcaattgga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgcatggctggtcacctctaccgaggtgcctgcccctttgcaagtgacattcaattgga 800

                                                                       
Query: 601 tttccaaatgaactctcccctgatggcttctcggaaaattcacttccgtgataccattag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttccaaatgaactctcccctgatggcttctcggaaaattcacttccgtgataccattag 860

                    
Query: 661 cgatggtcc 669
           |||||||||
Sbjct: 861 cgatggtcc 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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