BAC Information

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BAC

Clone NameMSMg01-521A11
Chromosome13 (Build37)
Map Location 23,276,514 - 23,277,098
singlet/doubletsinglet
Overlap genenone
Upstream geneV1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12
Downstream geneV1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521A11.T7 (MSMg01no521_a11.b1)MSMg01-521A11.TJ (MSMg01no521_a11.g1)
ACCAG591920AG591921
length755746
length of high quality
(start - end)		600 (156 - 755)570 (80 - 649)
definitionCHROMAT_FILE: MSMg01no521_a11.b1 PHD_FILE: MSMg01no521_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:14 2005CHROMAT_FILE: MSMg01no521_a11.g1 PHD_FILE: MSMg01no521_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:14 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTTCTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCATTTCCTCTCAGCAATCTTGGAAAACTGTCACCCCAATC
CCCTTGGGTTTGGGTGTCTGGTTTTGGTTATTTTATGAGTTATAGATATG
TTGTCATTCTAAGGAATAATTTGGAAATAATTATAGCTTAGGTCAGGGAG
GAAAACTAAAGAGAGCTTAGACTCGGGGATTTCACATCTTTCCTTTTCTC
TTCTCTATCCTTCTTTCTTAGTTAAAGGGAAAGAGATTGAAAAGAAAAAA
ATGGGGATAAAGTAATAGTATAGAGATTAGATAAATGGGGATGGATTATT
AATTTACTTTTAAATCATTTTATAGTTGTAATCTTATATTGGTACAAATC
TTTATATTTTGATGTAGAATTGAAGTTATATTTTCTTACAGTGGTACAGA
ATTTATATATTGATACAGGTTTAAGGTTTTCATAAATAAATAAATCTTTG
TATATTGACACAAAATTTAAAATTAATTTTGTTACTCTTAGATAGGCATT
GTACCTATGCAACCCATTTAAGAATACAAGGATTAGACCCAGTCCTTTTA
ATAGCTGCTATTGCAAACTGTTTAAGATATTAAGTAATGCAATAGTCAGA
TAGTTAAACTCATTGTAATTTAGATACTAATTTAATTAATTACAATAAAA
AGTTTTCAAGGTTTTTCAAATAATGAATAGCCCAAAATATTCAATGTTTG
TCAGT

NAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAAGCAGCCATGGACACAT
GTAATGTTGCAGATGAGGTCCCTGAAACTCCTCCTTTCCCTGTGGACTCA
GGGATGCTGTGTAGGCTCTAGCAGTTGATTTTAGTGATGGCTATTCAAAT
CTTAAATTTTAAAGAAAATTTTTATTTTTTAACTCTACACTAGCAAAATG
ACTTGTTCATATGTGAGTGTGTATGTGTGTCTCTGTGTGTGTGTATGTGT
GTGTGTGTGTATGTATGCATTGTCCTTGTTAACTGTCAGCATAGTTGAAC
TGACCTCCAAATTTCCCCATCCAAAATTTCTTCCTCTCTTTTTCCTTGTA
TTTCATCATATTTCCCTATGCAATTCCCAGAGCTCATGCTGACCCTGTCC
TCCTTCCCCACAGCACACACAGACACTGGGAAACCCTGCTGCTCAACACC
TGTAACATCTGTCAGACTTAGTAATATGTTTCACAGTGCCTCCTCTTGTT
GGATATTTCTTTCTTCTTCCATCTTTATTAGAATAACAACTTCTAGATTT
ACATTTGCCTCACAATTTCAATTTCTACGTCTTTTCTTTAGATTTATTCA
TGTATGTATATGAAGGCTCTGCTTTTCTGCATATGTCTGCATGAGAAAAG
AGGGCTTCTGATCCCATTATAGATTGCACTGAGCTACCATTTTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_a11.g1 MSMg01no521_a11.g1 CHROMAT_FILE:
MSMg01no521_a11.g1 PHD_FILE: MSMg01no521_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:14 2005
         (570 letters)



>mm_chr13_23276329_23277299
          Length = 971

 Score =  607 bits (314), Expect = e-178
 Identities = 515/592 (86%), Gaps = 30/592 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaagcagccatggacacatgtaatgttgcagatgaggtccctgaaactcctcctttcc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 186 atgaagcagccatggacacatgtaatgttgcagatgaggtcccagaagctcctcctttcc 245

                                                                       
Query: 61  ctgtggactcagggatgctgtgtag-gctctagcagttgattttagtgatggctattcaa 119
           |||||||||| |||||||||||| | |||||||||| ||| ||| |||||| ||||||||
Sbjct: 246 ctgtggactctgggatgctgtgt-gtgctctagcaggtgagtttggtgatgactattcaa 304

                                                                       
Query: 120 atcttaaa-ttttaaagaaaatttttattt---ttta--act---ctacactagcaaaat 170
           |||| ||| |||||||||| ||||||| ||   |  |  |||   |||||||||||||||
Sbjct: 305 atct-aaacttttaaagaagatttttacttcact--agcacttcactacactagcaaaat 361

                                                                       
Query: 171 gacttgttcatatgtgagtgtgtatgtgtgtct----ctgtgtgtgtgtatgtgtgtgtg 226
           |||||||||| ||||| |||||||| |||||||    |||||||||| | ||||||| ||
Sbjct: 362 gacttgttcaaatgtgtgtgtgtatatgtgtctgtgtctgtgtgtgtctttgtgtgtctg 421

                                                                       
Query: 227 tgtgtatgtatgcattgtccttgttaactgtcagcatagttgaactgacctccaaatttc 286
           |||| || ||  || |||||||||||||| |||||||||||||| ||| |||||||||||
Sbjct: 422 tgtgaatata--cagtgtccttgttaactctcagcatagttgaattgaactccaaatttc 479

                                                                       
Query: 287 cccatccaaaatttcttcctctctttttccttgtatttcatcatatttcccta-tgcaat 345
           |||| ||||||||||||| ||||||| || ||||||||||||||||||||||| | ||||
Sbjct: 480 cccaaccaaaatttcttcttctctttctcattgtatttcatcatatttccctact-caat 538

                                                                       
Query: 346 tccca------gag-ctcatgctgaccctgtcctccttccccacagcacacacagacact 398
           |||||      ||| |||| ||||| ||||| ||||||||||||| ||||||||||||||
Sbjct: 539 tcccaaagcccgaggctcacgctgaacctgttctccttccccacatcacacacagacact 598

                                                                       
Query: 399 gggaaaccctgctgctcaacacctgt-aacatctgtcagacttagtaatatgtttcacag 457
           ||||||||||||||||||||| |||| |||| |||||||| |||||||||  ||||||| 
Sbjct: 599 gggaaaccctgctgctcaacaactgttaacacctgtcagagttagtaatacctttcacac 658

                                                                       
Query: 458 tgcctcctcttgttggatatttctttcttcttccatctttattagaataacaacttctag 517
           ||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||
Sbjct: 659 tgcctcctcttgttggatatttctttcttcttgaatccttattagaataacaacttctag 718

                                                               
Query: 518 atttacatttgcctcacaatttcaatttctacgtcttttctttagatttatt 569
           | ||| |||| ||||| || ||||||| |||  |||||| ||||||||||||
Sbjct: 719 aattatatttacctcaaaacttcaattcctatatcttttttttagatttatt 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space:   538160
Effective search space used:   538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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