BAC Information

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BAC

Clone NameMSMg01-521E19
Chromosome13 (Build37)
Map Location 90,070,854 - 90,071,065
singlet/doubletsinglet
Overlap geneXrcc4
Upstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940
Downstream geneTmem167, LOC100043170, LOC624190, EG435376, Rps23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521E19.T7 (MSMg01no521_e19.b1)MSMg01-521E19.TJ (MSMg01no521_e19.g1)
ACCAG592127AG592128
length761812
length of high quality
(start - end)		614 (46 - 659)215 (76 - 290)
definitionCHROMAT_FILE: MSMg01no521_e19.b1 PHD_FILE: MSMg01no521_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:35 2005CHROMAT_FILE: MSMg01no521_e19.g1 PHD_FILE: MSMg01no521_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCTTAACTGATGCTATTAAATGGCTGAGAAGCACCTAAAGAAATG
TTCAACATCCTTAGTCACCAGGGAAATGAAATAAAAACAACCCTGAGAGT
CTACCTCACACCAATCAGAATGGCTAAGATCAAAAACTCAGGTGAAAGCA
GATGCTGGTGAGGTTGGAGAAAAGGGAACACTTCTCCATTGTTGGTGGGA
TTGAAAGCTGGTACAACCACTCGGAAAATCACTCTCATAGTTCCTCAGAA
AATTGGAAATAGTACTACCTGAGGACCTAGTAATACCACTCCTGGGCATA
TACCCAAAAGATGTTCCAACATGTAACAAGGACACATGCTCCACTAAGTT
CATATCAGCCTTATTTGTAATAACCAGAAGCTGAAAAGAACCCAGATGTT
TCTCACTAGAGGAATGGATACAGAAAATATGATACATTTACACAATGGAG
TACTACTCAGCTATTAAAAACAACGAATTCATGAAATTCTTAGGCAAATG
GATGGAACTAGAAAAATATACTGAGTGAGGTAACCCAATCACAAAAGAAC
ACACATAGTATGCACTCACTGATAAGTGGATATTAACCCAAAGGCTGGGA
ATACCCAAGATACAATTCAAAGACCACATGAAGAACAAGAAGAAGAAAGG
CCGGACGTGGTGGCACACGCCTTTTATCCCAGCACTCTGGAAGCAGAAGC
AGGTGGATTTT

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCAGAACCTCTAAAATATTTTGA
CTTTATGACTAGTACTGGTTGCTTTGTGCTTTTTCGTAATCTGCTTCATT
TTGGTTATAGCCAAATCATTTTAATAAACAGTTATTATCTCACTGTTTAA
CCGTTAATGTTTAACTATTAATGAACTCATCTGTGTGTATTTGGATGTGT
ATATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNNNNNNNNNC
NNNNNNTGNNTNNNNNNNNNNTNTTTTTTTTTNTNNTNTTTTTTTNNTTT
TTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTNTNNNTNNNT
TNNTTNTTNTNNTNNNTTTCCCCCCCCCCCCCCCTCCTTCTTTTTTCTCT
TTTTTTCTCTTTTTTCTCCCCTTTTTTCTCTTTTTTCTCTCTTCTCCTCC
TTTTTTCTTTCCTTCTTTTTTTCTTTCCCTCCCCCCTTCTCTCCTCTTCT
TTTTTTTTCTTCCCTCCCCTCCCCTCTTTCTCCCTCCCCCTTTTTTTTNT
CTCCTCTTTTTTCTTTCTTTTCTTTTCTTTTTTCTCCCCCCCCCCCCTTT
TTTCTTTTCTTTTTTTCTTCTTTTCCCTCTTCTTTTTTTTTTTTTCTCCC
TCCCCTCTTTTCCTCCCTTTTTTCTTTTCTTTTTTTCTTTTTCTTCCTCT
TCTTCCTTTTTTCTTTCCCCCTTCTCTCTCCCTTCTTCCTCCTCTTTTTT
CTTTTTCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_e19.g1 MSMg01no521_e19.g1 CHROMAT_FILE:
MSMg01no521_e19.g1 PHD_FILE: MSMg01no521_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:35 2005
         (215 letters)



>mm_chr13_90070710_90071324
          Length = 615

 Score =  395 bits (204), Expect = e-114
 Identities = 210/212 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcagaacctctaaaatattttgactttatgactagtactggttgctttgtgctttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cttcagaacctctaaaatattttgactttatgactagtactggttgctttgtgctttttc 297

                                                                       
Query: 61  gtaatctgcttcattttggttatagccaaatcattttaataaacagttattatctcactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gtaatctgcttcattttggttatagccaaatcattttaataaacagttattatctcactg 237

                                                                       
Query: 121 tttaaccgttaatgtttaactattaatgaactcatctgtgtgtatttggatgtgtatatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tttaaccgttaatgtttaactattaatgaactcatctgtgtgtatttggatgtgtatatg 177

                                           
Query: 181 tatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 212
           ||| ||| ||||||||||||||||||||||||
Sbjct: 176 tatatgtatgtgtgtgtgtgtgtgtgtgtgtg 145


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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