BAC Information

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BAC

Clone NameMSMg01-521G01
Chromosome13 (Build37)
Map Location 36,587,196 - 36,587,803
singlet/doubletsinglet
Overlap geneFars2
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, LOC100041590
Downstream geneLOC666758, Nrn1, F13a1, Ly86, LOC100042794, LOC100042800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521G01.T7 (MSMg01no521_g01.b1)MSMg01-521G01.TJ (MSMg01no521_g01.g1)
ACCAG592187AG592188
length747746
length of high quality
(start - end)
692 (50 - 741)657 (81 - 737)
definitionCHROMAT_FILE: MSMg01no521_g01.b1 PHD_FILE: MSMg01no521_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:42 2005CHROMAT_FILE: MSMg01no521_g01.g1 PHD_FILE: MSMg01no521_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCGCGGGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATGGCTAAATCCAGCTAACAGACTTGTACTGCACATTGTTTATTT
TCATCCTGAGATGCCTTAAAAATCTACTCTCAGCTACTTCTGAGTCCACC
ATACATTGCCACTGGGTGTGCTCACTGTGTGGTACCCCAGGACTCTTGAA
ATTCCTTTCTAACAGAAAGCTTTTATCTTTGAGGCAGCATATCCCCTCCC
TTTTTCCACAGCCCCCGGGGAAAAGGACATCCTTCTAGTTTCAATATCTG
TGTGTTCAGCCTCGTAGAATGGACATGTGGTTATTGATTGACATTTGAAT
TTCTTTAATTTTTTTTCTTTTAGCTTTTTAAAAGATCTCTTCTTTATTTA
CATTTCAAATGTTATCCCCTCTCCTGGTTCCCCTGTGAAAAACTCCTATC
CCCTCCCCACTTTCCCTGCTCACTAACCACCCACTTCTGCTTCCTGGCCC
TGGCATTCCGGTACACTGGGGCTTAGAAACTTCACAGGACCAAGGGCCTC
TCCTCCCATTGATGACTGATTAGGCTACTTATGCAACTGGAGCCATGAGT
CCCACCATGGTCTTTGGTTGATGGTTTAGTCCCAGGGAGCTCTGGGGGTA
CTGGCTAGTTCATATTGTAGTTTCTCCTATGGGGCTGCAAACCCATTCAG
CTCCTTGGGTACTTTCTTTAGCTCCTTCATTAGGGATCCTGTGTTCA
NCCCTGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTCTGATCAACTGCTCT
GATAAGTCTGTCTTAATTAGTTAGGACTTCCATTGCTATGAAGAGACATC
ATGATCAAGGCAACTCGTATAAGGACAACATTTAATTGAGGCTGGCTTAC
AGTTTCAGAGGTTTAGTCCATTATCATCATGGCAGGAGGCATGGCCCTGC
CCTTTCTACACTGTGCCTGTCCTTCTGCAGCAGGGTAGCAGGTAGGCAGA
CATGGTGCTGGAGAAGGAGCTGAATATTCTACATCTTGTTCTGAATGTAA
TAAGTAGAAGATTGGCTTCCAAGCACCTAGGAGGAAGATCTCAGAACCCA
CCCCGACAGTGACACACTTCCTCCAACAAGGTCACATCTCCTAATAATGC
CACTCCCTGGGCCAAGCATGTTCAAACCACCACACCTTATTTTGACCTTT
TATGGACAAGGAGAAAGCAATGTCCACTAAGTGGAAAATAGAGCAACAGT
AAATTGGACTAGACTTTGTAAACACAAAATGAAATAAAGGGGAAGATCAA
AATCAGGCTGTTATTCAGTGACAGAGTGCTTAACTAGCTTGTTCAAGAAG
TAGGGTTCAACCTCAATGCCACAGAAAACCACAAGCAAAAGAAAATCCAG
ATTCTGGAGAGAAAGTGAAGGCCAAAGGCAAGCCAAGAACCAGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_g01.g1 MSMg01no521_g01.g1 CHROMAT_FILE:
MSMg01no521_g01.g1 PHD_FILE: MSMg01no521_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:42 2005
         (657 letters)



>mm_chr13_36586947_36588003
          Length = 1057

 Score = 1004 bits (519), Expect = 0.0
 Identities = 599/657 (91%), Gaps = 49/657 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctctgatcaactgctctgataagtctgtcttaattagttaggacttccattgctatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tccctctgatcaactgctctgataagtctgtcttaattagttaggacttccattgctatg 309

                                                                       
Query: 61  aagagacatcatgatcaaggcaactcgtataaggacaacatttaattgaggctggcttac 120
           |||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct: 310 aagagacatcatgatcaaggcaactcttataaggacaacattcagttgaggctggcttac 369

                                                                       
Query: 121 agtttcagaggtttagtccattatcatcatggcaggaggcatggccctgccctttctaca 180
           ||||||||||||||||| ||||||||||||||||||||||                    
Sbjct: 370 agtttcagaggtttagttcattatcatcatggcaggaggc-------------------- 409

                                                                       
Query: 181 ctgtgcctgtccttctgcagcagggtagcaggtaggcagacatggtgctggagaaggagc 240
             ||||                           |||||||||||||||||||||||||||
Sbjct: 410 --gtgc---------------------------aggcagacatggtgctggagaaggagc 440

                                                                       
Query: 241 tgaatattctacatcttgttctgaatgtaataagtagaagattggcttccaagcacctag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaatattctacatcttgttctgaatgtaataagtagaagattggcttccaagcacctag 500

                                                                       
Query: 301 gaggaagatctcagaacccaccccgacagtgacacacttcctccaacaaggtcacatctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggaagatctcagaacccaccccgacagtgacacacttcctccaacaaggtcacatctc 560

                                                                       
Query: 361 ctaataatgccactccctgggccaagcatgttcaaaccaccacaccttattttgaccttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaataatgccactccctgggccaagcatgttcaaaccaccacaccttattttgaccttt 620

                                                                       
Query: 421 tatggacaaggagaaagcaatgtccactaagtggaaaatagagcaacagtaaattggact 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 tatggacaaggagaaagcaatgtccactaagtggaaaatagagcaacggtaaattggact 680

                                                                       
Query: 481 agactttgtaaacacaaaatgaaataaaggggaagatcaaaatcaggctgttattcagtg 540
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agactttgtgaacacaagatgaaataaaggggaagatcaaaatcaggctgttattcagtg 740

                                                                       
Query: 541 acagagtgcttaactagcttgttcaagaagtagggttcaacctcaatgccacagaaaacc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acagagtgcttaactagcttgttcaagaagtagggttcaacctcaatgccacagaaaacc 800

                                                                    
Query: 601 acaagcaaaagaaaatccagattctggagagaaagtgaaggccaaaggcaagccaag 657
           |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acaagcgaaagaaaacccagattctggagagaaagtgaaggccaaaggcaagccaag 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)