BAC Information

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BAC

Clone NameMSMg01-521I18
Chromosome13 (Build37)
Map Location 22,053,762 - 22,054,387
singlet/doubletsinglet
Overlap genenone
Upstream geneAoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184
Downstream geneGm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521I18.T7 (MSMg01no521_i18.b1)MSMg01-521I18.TJ (MSMg01no521_i18.g1)
ACCAG592317AG592318
length774767
length of high quality
(start - end)		631 (47 - 677)598 (77 - 674)
definitionCHROMAT_FILE: MSMg01no521_i18.b1 PHD_FILE: MSMg01no521_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:55 2005CHROMAT_FILE: MSMg01no521_i18.g1 PHD_FILE: MSMg01no521_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTATATATAGCAAGCAAAAAGATGTACAGGGGGCCATGACAAT
TCCCTCTGTATTCCAATTTTAGTCTTTCTGTTGCCAAAGTGAAAAGGTTT
TAAGATTTTACTTTTATATGTGTGTATCTGTATGAGTGAATGACATATGT
GTGTAGGTGACCTAGAAGGCCAGAAAAGGGTCTGGACAGGTAGCTGTGTG
CTGCCCACAGTGGGTCCTGCACCCCAGCCCTGGACCGTACTTTAGATGAT
TAGGTGAGGACATCCTCTGCTATGAGCATCCACCAACCAGTCTTTGAGTT
CTTTAAGAGCCTAGTTCAAATTTTCAACTGGAAATCAGAATTGTTAGCTG
GACGGTGGTGGTTACACATCTTTAATCCTAGCCCTTGGGAGGCAGAGGCA
GGTAGATAACTGAGTTTGAGGCCAGGTTGGTCTACAGAAATCCTGGCTTT
GCTATAAATGAATGGATGCCTCCTGGAGTAGATGAAGAAATGCCATTAAA
CCCCACAAAATTATTGATCTTCTGTCCTCTAGTCTGTCAGTGCTAGAAGA
TGTTTAAGAATATGGCTGAACAAGTTAATGTTGAGGGCAAATTCCATTAA
CTTTTGCTCTTTTAAACTGTTACTAANGAGCTGGAGAGATGGCTCACTGG
TTACAAAAAGACTATGTGTTGCTCTTGCAGAGGGTCCCTGGTTTGTTCCC
AGTATCTACAAGGCTCACATCTAT

NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCACTAAACTCATCTGGTTCTGA
ACTTTTTTTGGTTGGGAGACTATTAATGACTGCTTCTACTTCTTTAGGGG
TTATGGGACTGTTTAGATGGTTTATCTGATCCTGTTTTAACTTTGGCAAC
TGCTATCTGTCTAGAAAATTGTTAATTTCATCCAGATTTTCCAATATACG
CTTTTATAGTAGGATCTGATGATCTTTTGAACTTCCATGTTTTCGGTTGT
TATTATCTTCCTTTCCATTTCTGATTTTATTAATTTGGATACTGTCTCTG
TGCCCTCTGTATCAATCTTCTTAATTTTCCCAAAGAATCAGCTCCTGGTT
TTGTTGTATAGTTGTTTTTGTTTCTTTTTGGTTGATTTCAGCCCTGAGTT
TGATTATTGCCTGCCTTCTACTCCTCTTGGGTGTATTTGCTTCTTTTAGT
TCTAGAGCTTTCAGGTGTGCTGTCAAACTGCTAGGGTAAGCTCTCTGCAG
TCTCTTTTTGGAGACACATAGAACTATGAGTTTTCCTCTTAGCACTGCTC
CATTGTGTCCCATAAGTTTTGGTACGATGAATCTTCATTTTCATTAAATT
CTAAAAAGTCTGATAGAACTTAGTTAAGATCAGCCAAGATAGAACATAGT
TAATGTTAAGTGATAATTTGGGGTTATCCATGAGATGGTAGATTCTAAAA
ACATGGTGGGTTAGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_i18.b1 MSMg01no521_i18.b1 CHROMAT_FILE:
MSMg01no521_i18.b1 PHD_FILE: MSMg01no521_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:55 2005
         (631 letters)



>mm_chr13_22053558_22054588
          Length = 1031

 Score = 1210 bits (626), Expect = 0.0
 Identities = 626/626 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactatatatagcaagcaaaaagatgtacagggggccatgacaattccctctgta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactatatatagcaagcaaaaagatgtacagggggccatgacaattccctctgta 264

                                                                       
Query: 65  ttccaattttagtctttctgttgccaaagtgaaaaggttttaagattttacttttatatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttccaattttagtctttctgttgccaaagtgaaaaggttttaagattttacttttatatg 324

                                                                       
Query: 125 tgtgtatctgtatgagtgaatgacatatgtgtgtaggtgacctagaaggccagaaaaggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtgtatctgtatgagtgaatgacatatgtgtgtaggtgacctagaaggccagaaaaggg 384

                                                                       
Query: 185 tctggacaggtagctgtgtgctgcccacagtgggtcctgcaccccagccctggaccgtac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctggacaggtagctgtgtgctgcccacagtgggtcctgcaccccagccctggaccgtac 444

                                                                       
Query: 245 tttagatgattaggtgaggacatcctctgctatgagcatccaccaaccagtctttgagtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttagatgattaggtgaggacatcctctgctatgagcatccaccaaccagtctttgagtt 504

                                                                       
Query: 305 ctttaagagcctagttcaaattttcaactggaaatcagaattgttagctggacggtggtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctttaagagcctagttcaaattttcaactggaaatcagaattgttagctggacggtggtg 564

                                                                       
Query: 365 gttacacatctttaatcctagcccttgggaggcagaggcaggtagataactgagtttgag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gttacacatctttaatcctagcccttgggaggcagaggcaggtagataactgagtttgag 624

                                                                       
Query: 425 gccaggttggtctacagaaatcctggctttgctataaatgaatggatgcctcctggagta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gccaggttggtctacagaaatcctggctttgctataaatgaatggatgcctcctggagta 684

                                                                       
Query: 485 gatgaagaaatgccattaaaccccacaaaattattgatcttctgtcctctagtctgtcag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gatgaagaaatgccattaaaccccacaaaattattgatcttctgtcctctagtctgtcag 744

                                                                       
Query: 545 tgctagaagatgtttaagaatatggctgaacaagttaatgttgagggcaaattccattaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgctagaagatgtttaagaatatggctgaacaagttaatgttgagggcaaattccattaa 804

                                     
Query: 605 cttttgctcttttaaactgttactaa 630
           ||||||||||||||||||||||||||
Sbjct: 805 cttttgctcttttaaactgttactaa 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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