BAC Information

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BAC

Clone NameMSMg01-521M03
Chromosome13 (Build37)
Map Location 21,076,976 - 21,077,580
singlet/doubletsinglet
Overlap geneAoah
Upstream geneLOC432730, Elmo1, LOC100040226, LOC665381, LOC665386
Downstream geneOlfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521M03.T7 (MSMg01no521_m03.b1)MSMg01-521M03.TJ (MSMg01no521_m03.g1)
ACCAG592478AG592479
length736740
length of high quality
(start - end)		566 (73 - 638)603 (81 - 683)
definitionCHROMAT_FILE: MSMg01no521_m03.b1 PHD_FILE: MSMg01no521_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:11 2005CHROMAT_FILE: MSMg01no521_m03.g1 PHD_FILE: MSMg01no521_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCCGGCGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAAGGCCCATACCTAAACACGATAATAGCAACCTAC
AGCAAAGCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAAT
CCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTAT
TCAACATTGTACTTGAAGTCCTAGCCAGAGCAATTCGACAACAAAAGGAG
ATAAAGGGGATACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGC
AGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAAC
TCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAAC
TCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTTAGAA
AGAAATTAGGGAAACAACACCCTTGTATATTATTTTACAAATAATATAAA
ATACCTTGGCGTGACTCTAACTAAGGAAGTGAAACATCTGTATGAAATGA
ACTTCAAGTCTCTGAAGAAAGAATTTAAAGAAGATCTCAGAAGATAGAAA
GATCTCCCATGCTCATGGATTGGCAGGACCAACATGGTAAAAATGGCTAT
CTTGCCCAAAGCAATCTATAGATTCTATGTAATCCCCATTCAAATTCCCA
CTTAATTCTTCCTCGAATTAGAAAGAGCAACCCGCA

NCCCCCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGTTGGGCTGAGGTCAA
GGAATGCTAATTTGTGGGTAATCAAAGGGGAACCTGGAGTAAATGACTGA
ATTGATATGTAAATAAAAGACTTGGGCTTTGTGGTCAGTATGAGATGAGC
TAGCAGAAAGCAACAACAGTTCTTCTTTTAAGAATTTTTTTTTCTAGCAA
GAGTTGAGCTGTCTGGAGATCTCTGGAGAACAAACACAACTCTTTTAGAA
TTTTTTCTAACAGGATTTCTGTTAGAAATTTTTCTAGCAGCTATCCAGAA
AGAACTGCTTAGAGAGTGAACACAGCTCTTTTAGACATTTTTTTTTCCTA
GAAAATTCCACTTTTTTCTTTTTTTCTAGCAGCTTTTCTGACTTTGGTCA
GAAAATACAGTGAGCATGTGAGTGTGTGTGTGCACACGATGTGTGTGTGT
GTGTATGTGTGTGTGCATGTGTAAGTAGGGGTGCTTCATCACTTGTGTGG
AGGTCTCTGCTTCTGCTCTTGGTATTTGGCTTATATGTCAATGTCAAATG
CTTATGTTCATGGCCTGAGTCTGTATTTCTCAGGCTGGCCTGACTTTTGT
CTCTTTTCCTAGCTTCTCTAGGTCTCTTATTCTTTCAGAGGCTTAACCAA
ACCCCGAGGTATGAACCGGTCAAGTGAAGTTTCTTCAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_m03.g1 MSMg01no521_m03.g1 CHROMAT_FILE:
MSMg01no521_m03.g1 PHD_FILE: MSMg01no521_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:11 2005
         (603 letters)



>mm_chr13_21076790_21077794
          Length = 1005

 Score = 1096 bits (567), Expect = 0.0
 Identities = 596/609 (97%), Gaps = 10/609 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggttgggctgaggtcaaggaatgctaatttgtgggtaatcaaaggggaacctggagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 agtggttgggctgaggtcaaggaatgctaatttgtgggtaatcaaaggggaacctggagt 732

                                                                       
Query: 61  aaatgactgaattgatatgtaaataaaagacttgggctttgtggtc-agtatgagatgag 119
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 731 aaatgactgaattgatatgtaaataaaagacttgggctttgtggtcta-tatgagatgag 673

                                                                       
Query: 120 ctagcagaaagcaacaacagttcttcttttaagaa---tttttttttctagcaagagttg 176
           ||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||
Sbjct: 672 ctagcagaaagcaacaacagttcttcttttaagcattttttttttttctagcaagagttg 613

                                                                       
Query: 177 agctgtctggagatctctggagaacaaacacaactcttttagaattttttctaacaggat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 agctgtctggagatctctggagaacaaacacaactcttttagaattttttctaacaggat 553

                                                                       
Query: 237 ttctgttagaaatttttctagcagctatccagaaagaactgcttagagagtgaacacagc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttctgttagaaatttttctagcagctatccagaaagaactgcttagagagtgaacacagc 493

                                                                       
Query: 297 tcttttagaca--tttttttttcctagaaaattccacttttttctttttttctagcagct 354
           |||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 492 tcttttagacatttttttttttcctagaaaattccacttttttctttttttctaacagct 433

                                                                       
Query: 355 tttctgactttggtcagaaaatacagtgagcatgtgagtgtgtgtgtgcacacgatgtgt 414
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||
Sbjct: 432 tttctgactttggtcagaaaatacagtgagcatgtgagtgtgtgtgtgcacacga---gt 376

                                                                       
Query: 415 gtgtgtgtgtatgtgtgtgtgcatgtgtaagtaggggtgcttcatcacttgtgtggaggt 474
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 375 gtgtgtgtgtatgtgtgtgtgcatgtgcaagtaggggtgcttcatcacttgtgtggaggt 316

                                                                       
Query: 475 ctctgcttctgctcttggtatttggcttatatgtcaatgtcaaatgcttatgttcatggc 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctctgcttctgctcttggtatttggcttatatgtcaatgtcaaatgcttatgttcatggc 256

                                                                       
Query: 535 ctgagtctgtatttctcaggctggcctgacttttgtctcttttcctagcttctctaggtc 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctgagtctgtatttctcaggctggcctgacttttgtctcttttcctagcttctctaggtc 196

                    
Query: 595 tcttattct 603
           |||||||||
Sbjct: 195 tcttattct 187


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1005
Length adjustment: 10
Effective length of query: 593
Effective length of database: 995
Effective search space:   590035
Effective search space used:   590035
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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