BAC Information

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BAC

Clone NameMSMg01-523B16
Chromosome13 (Build37)
Map Location 22,595,856 - 22,596,513
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7
Downstream geneV1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523B16.T7 (MSMg01no523_b16.b1)MSMg01-523B16.TJ (MSMg01no523_b16.g1)
ACCAG593504AG593505
length726740
length of high quality
(start - end)		672 (40 - 711)406 (83 - 488)
definitionCHROMAT_FILE: MSMg01no523_b16.b1 PHD_FILE: MSMg01no523_b16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:55 2005CHROMAT_FILE: MSMg01no523_b16.g1 PHD_FILE: MSMg01no523_b16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCCCCCCAATTTTTTGGGTCGCTATCGACTCACTATCCGGAGAGGATCC
GCGGAATTCTGCATGAGCAATGAGTGCTCTTACTCCCTGAACCTGCTCTT
CAGTCCACATGTGTACATTTTTAACTAGTTTTCACAAGTTTTTACTTCTA
CTATGTTAGAATAAATAAATTCAGTCTGTGTTCAACCAGTTAAATTAGGG
TTCTGATGTGGTAGACGGTCATACATATTCTAGAAGCTTAAAGAATATCA
GAGCGTTAGACAGAAATGTCTGGGTTCACCAGAACATGCTTTGTGACCAC
CCACTGTGAATTAAAGTTTTTGATTTCCCAATTCATATATTCACCACTTT
GAGCATATTATTTATTTGACTTCTTTAAAAACTATTTTTGTATGTAAATT
ATGTTTTATACAATACATGTATATTTTAGAGAGTCAATGAACTAGCATAC
ATAATACCTAATGAAGTGCTCAGAATGTTTTAAAAATCAATTTTCTAAAA
TAAGTTGTAAGAGTTAGTATGTAACCTCATGGCTGTTTTATCCACAATTC
TCATACTCCATGGTTTACATTAGGTTTATAGAAGAAGACATTCACAATAA
ATAAAATCATGATAAAGAGAGAAAGAAAGACTATTCTATCCACAAAGGAC
TGAAGTCAACAGAAATTTGCTCAGATCAAAGTACTAAGTCATTGGAAGCA
AATAACACAGGTTGTGCAGAAACTGG

TTTTTGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAGCCTGATAAACAGC
TTCGGTGAAGAGGCTGGATAAAAAACCGACTCAAACAAGTCAATGGCCTT
TCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACAC
CCTTCTCAGTCACAAATAATATAAAATATCTTGTCGTGACTCTAACTAAG
GAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAAT
TAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCA
GGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTC
AATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAAG
AGCAATCTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAA
CTTCTCCTTCAGGAAAAAAGGAACCTCGGGGGGGGAAACCCCCCTGCCCG
GAACTAAAAGTTTTTTTTAACCAAAAAAATTGTGTAAAAAAAACCCGGGG
GGGGTCGGGGTAAAAGGGGCACAAAAACTTTTAACCCCCCGGGGGGAGAA
CAAATTTTTGGAGACACCCCCCCAATAAAGAGCGCCCCCCCCCCCCCCCT
GGTGGGGCCTTTTTTGTATTTTTTTTTATAAAGGGAGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_b16.b1 MSMg01no523_b16.b1 CHROMAT_FILE:
MSMg01no523_b16.b1 PHD_FILE: MSMg01no523_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:55 2005
         (672 letters)



>mm_chr13_22595643_22596714
          Length = 1072

 Score = 1257 bits (650), Expect = 0.0
 Identities = 656/658 (99%)
 Strand = Plus / Plus

                                                                       
Query: 14  ggaattctgcatgagcaatgagtgctcttactccctgaacctgctcttcagtccacatgt 73
           ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ggaattctgcaagagcgatgagtgctcttactccctgaacctgctcttcagtccacatgt 273

                                                                       
Query: 74  gtacatttttaactagttttcacaagtttttacttctactatgttagaataaataaattc 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gtacatttttaactagttttcacaagtttttacttctactatgttagaataaataaattc 333

                                                                       
Query: 134 agtctgtgttcaaccagttaaattagggttctgatgtggtagacggtcatacatattcta 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 agtctgtgttcaaccagttaaattagggttctgatgtggtagacggtcatacatattcta 393

                                                                       
Query: 194 gaagcttaaagaatatcagagcgttagacagaaatgtctgggttcaccagaacatgcttt 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gaagcttaaagaatatcagagcgttagacagaaatgtctgggttcaccagaacatgcttt 453

                                                                       
Query: 254 gtgaccacccactgtgaattaaagtttttgatttcccaattcatatattcaccactttga 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gtgaccacccactgtgaattaaagtttttgatttcccaattcatatattcaccactttga 513

                                                                       
Query: 314 gcatattatttatttgacttctttaaaaactatttttgtatgtaaattatgttttataca 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gcatattatttatttgacttctttaaaaactatttttgtatgtaaattatgttttataca 573

                                                                       
Query: 374 atacatgtatattttagagagtcaatgaactagcatacataatacctaatgaagtgctca 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 atacatgtatattttagagagtcaatgaactagcatacataatacctaatgaagtgctca 633

                                                                       
Query: 434 gaatgttttaaaaatcaattttctaaaataagttgtaagagttagtatgtaacctcatgg 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gaatgttttaaaaatcaattttctaaaataagttgtaagagttagtatgtaacctcatgg 693

                                                                       
Query: 494 ctgttttatccacaattctcatactccatggtttacattaggtttatagaagaagacatt 553
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ctgttttatccacaattctcatactccatggtttacattaggtttatagaagaagacatt 753

                                                                       
Query: 554 cacaataaataaaatcatgataaagagagaaagaaagactattctatccacaaaggactg 613
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 cacaataaataaaatcatgataaagagagaaagaaagactattctatccacaaaggactg 813

                                                                     
Query: 614 aagtcaacagaaatttgctcagatcaaagtactaagtcattggaagcaaataacacag 671
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 aagtcaacagaaatttgctcagatcaaagtactaagtcattggaagcaaataacacag 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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