BAC Information

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BAC

Clone NameMSMg01-523F08
Chromosome13 (Build37)
Map Location 80,424,408 - 80,424,848
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523F08.T7 (MSMg01no523_f08.b1)MSMg01-523F08.TJ (MSMg01no523_f08.g1)
ACCAG593678AG593679
length930752
length of high quality
(start - end)
---617 (77 - 693)
definitionCHROMAT_FILE: MSMg01no523_f08.b1 PHD_FILE: MSMg01no523_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:12 2005CHROMAT_FILE: MSMg01no523_f08.g1 PHD_FILE: MSMg01no523_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTGCCGGCCGNCTATACCGACTCACTATATCCGGAGTAGGATCGTG
CGGGAATTCTTCTCGCTTTTCCNNTCTGTACTCCATTTTNAAATTNNGNN
GGTATTTGGGTTGTTCTGGGAGTCTATAGCGCGCGGCGCGTCTCCCTCCT
CCCCNCTCCCNCCANCCCCCCCCCCCCCCCCCCCCCCCCCTTTGGTTTTT
NNTTTAATATTCCCCCCCTATATAGTGCTGACNNNNNNNNNNNNNNNNCT
TGGNAACTTGGCCCCTTCTCCAAAAATTGGGGTAAGGAAAATTTTTTTCC
CAAACCTGGGGGGCTTGTTTTTTTCTCTTTAAAAAGCTCCCTTTGCTTTA
AAAACTTTTCCNTGAAAGGGGTTTTTTCTTTTTTTTTAATTTGCGCCCCA
AAAAATTTTTTTCTCTTAACAAAAATATTCTTTCTTTTTTCTCCCGCGAA
AAAAAACCTCCCCCCAACCTTCTTTTTTTTTCAAACAAAAAATATATTTT
TTTTTATAACCCCCTCCCCCCTCTCTTTTCCCTTATATTAATAAAAGAAA
AAAAAATAAAATTTTTTTTTTTTTTTTCTTTTTTGTGGGCGCTCCCCCTC
CCACACACCACAAACAACAAAAAAAAAGACTCTTTCTTTTTTATATAAAA
ANANNNNCCCCTTCAAAAAAAAAAAAAAGCGCCGGGCGCGGGGGGGGGTA
TTATTTTATACTTACTACNGCGCCTCCTCTCTTTTTTTTCTTATATANTA
AAAAAAAAAACTTCTTATTTTTTCCTTTTCTTCTNCCCCCTCCNNGGAGG
GGNGCCGCCCCCCCCACACACACCCACTAAAANNATNTTTTTCTCCCTCC
CCCCTCTTCCTCTTTTTTTGANACTCCCCCCCCCCCCCCACCCCCAGCCC
TGTAATAGGTTGAGCTCTTGTCTCGTGTCG
NTTCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTATTCCTCAGTGTTGGGGAATG
CCAGGGCCAGGAAGTGGGAGTTGGTTGCTTGGCCAGCAGGGGGTTGGGGA
AAGGGAGTGAGGGAAGGTGTTTTTCAGAGGTGAAACCAGGAACATGGTTT
ATATGTTTATACATGGAATGTATATAAAGAAAATATCCAATAAAAAAATC
AGAAAAAATCAATAGAGCTGCAATGAAAATGGATGAATATATTTCTGTAG
TAATATATTAAATCATTTGGTTATATGCTCCAGAGTGGTAGCTGGATCAT
ATCGTAGATATATTTCTCATGTCTTGACAAATACCTAAACTGATTTCCAG
AGTGGTCCCACTGGTTCCCACTCTCTTCAACAGTGTATAGGTATTCTTCC
AGGGCAGTACTTTATGCATTCTATCTCTAGTTTCCCTGGTTAGCTAGTTT
TAGGCACCATTTCTGCATAATTTCTTGTAAAAGGTTTGCCACATAGACTT
ATTACATTCGTTTCTCTTCTCATATAAATTTTAATTTCTGATTTGCTTTC
CTCTTCTTTTCCTTAATGTTTACCAGTTTCTTCTGTTAAGAATCTCTAAT
TTGAGATAAGCCTCTTCAATGGATCTAGAAGGCTTTTAATATCAGTTTCC
TCTGTCAGACTGGTCAAAAAAAAAAAAAAAAACCCTGATATTATAGACGT
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_f08.g1 MSMg01no523_f08.g1 CHROMAT_FILE:
MSMg01no523_f08.g1 PHD_FILE: MSMg01no523_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:13 2005
         (617 letters)



>mm_chr13_80423835_80424851
          Length = 1017

 Score =  830 bits (429), Expect = 0.0
 Identities = 438/441 (99%)
 Strand = Plus / Minus

                                                                        
Query: 177  aaaaaatcaatagagctgcaatgaaaatggatgaatatatttctgtagtaatatattaaa 236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 aaaaaatcaatagagctgcaatgaaaatggatgaatatatttctgtagtaatatattaaa 955

                                                                        
Query: 237  tcatttggttatatgctccagagtggtagctggatcatatcgtagatatatttctcatgt 296
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 954  tcatttggttatatgctccggagtggtagctggatcatatcgtagatatatttctcatgt 895

                                                                        
Query: 297  cttgacaaatacctaaactgatttccagagtggtcccactggttcccactctcttcaaca 356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894  cttgacaaatacctaaactgatttccagagtggtcccactggttcccactctcttcaaca 835

                                                                        
Query: 357  gtgtataggtattcttccagggcagtactttatgcattctatctctagtttccctggtta 416
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 834  gtgtataggtattcttccagggcagtactatatgcattctatctctagtttccctggtta 775

                                                                        
Query: 417  gctagttttaggcaccatttctgcataatttcttgtaaaaggtttgccacatagacttat 476
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 774  gctagttttaggcaccatttctgcataatttcttgtaaaagttttgccacatagacttat 715

                                                                        
Query: 477  tacattcgtttctcttctcatataaattttaatttctgatttgctttcctcttcttttcc 536
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714  tacattcgtttctcttctcatataaattttaatttctgatttgctttcctcttcttttcc 655

                                                                        
Query: 537  ttaatgtttaccagtttcttctgttaagaatctctaatttgagataagcctcttcaatgg 596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654  ttaatgtttaccagtttcttctgttaagaatctctaatttgagataagcctcttcaatgg 595

                                 
Query: 597  atctagaaggcttttaatatc 617
            |||||||||||||||||||||
Sbjct: 594  atctagaaggcttttaatatc 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)