Query= MSMg01no523_j12.b1 MSMg01no523_j12.b1 CHROMAT_FILE:
MSMg01no523_j12.b1 PHD_FILE: MSMg01no523_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:34 2005
(694 letters)
>mm_chr13_115978858_115979951
Length = 1094
Score = 1228 bits (635), Expect = 0.0
Identities = 677/691 (97%), Gaps = 1/691 (0%)
Strand = Plus / Plus
Query: 5 gaattcctggttatgatcctagtctggacaagactgacagatcttacactccagtgaaga 64
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattcctggttgtgatcctagtctggacaagactgacagatcttacattccagtgaaga 264
Query: 65 ctactgtgcctatagctgagttcccatatggctctataattagaaactggaagttcaagt 124
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 265 ctactctgcctatagctgagttcccatatggctctataattagaaactggacgttctagt 324
Query: 125 gaccaaatgagcttcttttgaccaaagcatacttttgagttgatgtccaagtgcatgtgc 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gactaaatgagcttcttttgaccaaagcatacttttgagttgatgtccaagtgcatgtgc 384
Query: 185 tcttagtctacatcgctgagcttgtataaaagctattcatagccatgaaaggtacctggt 244
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcttagtctacatcactgagcttgtataaaagctattcatagccatgaaaggtacctggt 444
Query: 245 acagtgagttgtcaccattagaaccatcctttctctgtgtaggcatttttctgtcaccta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acagtgagttgtcaccattagaaccatcctttctctgtgtaggcatttttctgtcaccta 504
Query: 305 agtttttatcctacagagagtgctatgaaggacacctcttttaattgtgctgacagaatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtttttatcctacagagagtgctatgaaggacacctcttttaattgtgctgacagaatt 564
Query: 365 accagataagatttatgctattaagaataaggccacttgtatccagtcattttatgcact 424
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 565 accaggtaagatttatgctattaaggataaggccacttgtatccagtcattttatgcact 624
Query: 425 aagggctaagtgatatgtgtggtgaacttagccagacagcggagagcccagaggaaagca 484
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 625 aagggctaagtgatatgtatggtgaactcagccagacagcggagagcccagaggaaagca 684
Query: 485 ggtctcttatttatcagatagcatgagccaccttaggagggaggcttagtccctgagaaa 544
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 685 ggtctcttatttatcagatagcatgagccatcttaggagggaggctttgtccctgagaaa 744
Query: 545 tctttatatcaaaaattaaatatctgccttcccacattccttctgtattgcttttccttt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tctttatatcaaaaattaaatatctgccttcccacattccttctgtattgcttttccttt 804
Query: 605 cattgaaaatagatttattcattttttt-cacaaaatatatcctgagtacagtttctctc 663
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 805 cattgaaaatagatttattcattttttttcacaaaatatatcctgagtacagtttctctc 864
Query: 664 tctttattcctcttagttcctcccacttccc 694
|||||||||||||||||||||||||||||||
Sbjct: 865 tctttattcctcttagttcctcccacttccc 895
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_j12.g1 MSMg01no523_j12.g1 CHROMAT_FILE:
MSMg01no523_j12.g1 PHD_FILE: MSMg01no523_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:34 2005
(612 letters)
>mm_chr13_116132797_116133811
Length = 1015
Score = 1116 bits (577), Expect = 0.0
Identities = 603/613 (98%), Gaps = 3/613 (0%)
Strand = Plus / Minus
Query: 3 tgccctcctctggcctctgtggacagcatgagcatatgattcatgagcaaatatgtaggc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tgccctcctctggcctctgtggacagcatgagcatatgattcatgagcaaatatgtaggc 756
Query: 63 aaaatattcagatacataaataataataaagtaattaatagcgcttaaacactgaagaca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 aaaatattcagatacataaataataataaagtaattaatagcgcttaaacactgaagaca 696
Query: 123 tcctaaagtaatgagtttctactccgtctttgatatctagttaaagattagttatgttgt 182
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tcctaaagtaacgagtttctactccgtctttgatatctagttaaagattagttatgttgt 636
Query: 183 tgacctaaaagcttaaagaagagcctctctccaaattcctcagcttgactccagcttcta 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tgacctaaaagcttaaagaagagcctctctccaaattcctcagcttgactccagcttcta 576
Query: 243 ccaccaaggctctagagtctagctaggtactgctatttgaatatcttcattctaaaagag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ccaccaaggctctagagtctagctaggtactgctatttgaatatcttcattctaaaagag 516
Query: 303 aaagtactcgataaaatccggatagttagaaatgcaagttctctcagactgtgtaataca 362
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 515 aaagtactcgataaaatccggatagttagaaatccaagttctctcagactgtgtaataca 456
Query: 363 aactactgagcccaaagctcaacctcactacttaccattgatctctcaacacaccctcat 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 455 aactactgagcccaaagctcaacctcactacttaccattgatctctcaacacacccgcat 396
Query: 423 gtaagccagtaattcactccgttctttttcttcattagacagtggtcctctatctcttca 482
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gtaagccagtaattcactcagttctttttcttcattagacagtggtcctctatctcttca 336
Query: 483 ggaatcctgcaatcttcggttgaaataaaccattgtaataatataagctcacacccgatt 542
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 335 ggtatcctgcaatcttcgattgaaataaaccattgtaataatataagctcacacctgatt 276
Query: 543 ttcgttgtatttcagggaa---ttttttttaccacattgtgatcaccaccagttgcttta 599
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttcgttgtatttcagggaatttttttttttaccacattgtgatcaccaccagttgcttta 216
Query: 600 cccattggctatt 612
|||||||||||||
Sbjct: 215 cccattggctatt 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1015
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1005
Effective search space: 605010
Effective search space used: 605010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
