BAC Information

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BAC

Clone NameMSMg01-523P08
Chromosome13 (Build37)
Map Location 10,220,029 - 10,220,280
singlet/doubletsinglet
Overlap geneChrm3
Upstream geneEG667727, LOC100039719, Dip2c, LOC666986, Zmynd11, LOC100039604
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523P08.T7 (MSMg01no523_p08.b1)MSMg01-523P08.TJ (MSMg01no523_p08.g1)
ACCAG594150AG594151
length736728
length of high quality
(start - end)
559 (53 - 611)343 (83 - 425)
definitionCHROMAT_FILE: MSMg01no523_p08.b1 PHD_FILE: MSMg01no523_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:03 2005CHROMAT_FILE: MSMg01no523_p08.g1 PHD_FILE: MSMg01no523_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCCCTCTCTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGTTCTCAAAACCTATACTATGAAAGGAGAATAACTTC
TACAAGTTGTCCTCTGATCTCCGTACACATATTGAAGAGGGTGGGCCTGT
CAATACACACAAACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGGGAGAGAGAGAG
AGAGAGAGAGAGAAAGAAAGAGAGACAGAGAGAGAGAGAGAGACAGAGAC
AGAGACAGAGACAGAGACAGAGAGAGGAGAGAGAGAGTCAGGCAGACAGA
CAGAGAGAGACAGAGAGGCAGAAAAGCAGAAACAGAGACAGAGAGAAAGT
GATATACAGAGAGATGGATGAAAATGATACATAGATGCATTATAAATAAA
TATTCTATTGGCTTTTTAAAGCCTATTAGAAATTGTAAGCAAGATATCTA
TGTTTTATTTATTATGAAGTTTGGGCAGTTACCACACTTAAAATTTGTTT
TGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGCTTGTTTTGAGGA
AAGGAAATGAGGAATAAATTATTGTAATGTAGACCTCTTCATATTATGAT
TGGTCTTGGGGCTTTTAACTTTCTCTTTCCTAACCACACTCTCTGCACTG
GGATATGAATTGTGTCTTGTTTAGGAACCACCTTCC
ATTTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGATGGCCTTCTGCATA
TGTTAATCTCCCCCTACCTAGCAAACACAGAAGTTGATGCTCACAGTCAG
CTATTAGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTAGCC
AAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACT
AACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATG
GCCTAGTCAGCCATCACTGGAAAGAGAGGCCCACTGGACAGGCAAACTTT
ATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAATGGGAATGGGTGG
GTAGGGGAGTGGGTGGGGGGGANNNNNNNNNNNTNNNNNNNNNNNNNNNN
TTNNNTNNNNNNNNTNNNNNNNNNTTNTTTTTTTTTTTTTTTTTTTNTTT
TTTTTTTTTTTTTTNTTTTTTTTTTTTTTTNTTTTTTTTTNTTNTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTNNNNTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTNNNTTTNTTNTTTTT
TTTTTTTTTNNNNNTNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NNTTTTTTTTTTTTTTTTTNTNTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_p08.b1 MSMg01no523_p08.b1 CHROMAT_FILE:
MSMg01no523_p08.b1 PHD_FILE: MSMg01no523_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:03 2005
         (559 letters)



>mm_chr13_10219511_10220469
          Length = 959

 Score =  429 bits (222), Expect = e-124
 Identities = 247/258 (95%), Gaps = 7/258 (2%)
 Strand = Plus / Minus

                                                                       
Query: 259 acagagacagagagag-gagagagagagtcaggcagacagacagagagagacagagaggc 317
           ||||||| |||||||| |||||||||||  |||||| |||||    ||||||||||||||
Sbjct: 770 acagagagagagagagagagagagagag--aggcaggcagac----agagacagagaggc 717

                                                                       
Query: 318 agaaaagcagaaacagagacagagagaaagtgatatacagagagatggatgaaaatgata 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 agaaaagcagaaacagagacagagagaaagtgatatacagagagatggatgaaaatgata 657

                                                                       
Query: 378 catagatgcattataaataaatattctattggctttttaaagcctattagaaattgtaag 437
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 catagatgcattatgaataaatattctattggctttttaaagcctattagaaattgtaag 597

                                                                       
Query: 438 caagatatctatgttttatttattatgaagtttgggcagttaccacacttaaaatttgtt 497
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 596 caagatatctatgttttatttcttatgaagtttgggcagttaccacacttaaaatttgtt 537

                             
Query: 498 ttgttttgttttgttttg 515
           ||||||||||||||||||
Sbjct: 536 ttgttttgttttgttttg 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)