BAC Information

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BAC

Clone NameMSMg01-525A09
Chromosome13 (Build37)
Map Location 28,164,292 - 28,164,523
singlet/doubletsinglet
Overlap genenone
Upstream genePrl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1
Downstream genePrl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525A09.T7 (MSMg01no525_a09.b1)MSMg01-525A09.TJ (MSMg01no525_a09.g1)
ACCAG594961AG594962
length753744
length of high quality
(start - end)
235 (198 - 432)649 (70 - 718)
definitionCHROMAT_FILE: MSMg01no525_a09.b1 PHD_FILE: MSMg01no525_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:29 2005CHROMAT_FILE: MSMg01no525_a09.g1 PHD_FILE: MSMg01no525_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTTGGTCGTTAGTATGAGTCACTATCCCAATAGAATGTGCGGAATTCT
TTCCTTTTCCCGACTTGACATGCCATGGCAGGGCTTCACCGCAGTTTAAC
TAAGAAAGCACCATGAACCAACTTTAAACATTGAAGATGAATAGAGTCCC
CTCATAACCTTGATACCACAGCCTGACACAAGAAAGCATCAACTAGTAAT
AAGTAAATAAAGCAAATGGAACACTTCATAAATCTCCAAATTATAAAAAA
AAATTAATGATGTTTTATCTGTTCTCCAACATTGTATTTATTTTCTGTTT
AAATTCCAGCTTTTGTTGTTAAGCCCTAAAAGAGTTATACAAACGATTTT
CTTCCCAATCTTGATGTTGGGGATACCCTTCATTTGCATTCATCACCTGG
TGCACTGCACAGACCTACCATTGAGAACTGCACCGCATGAAATATATGCA
AACGAAATGAAATAAATTTATTAATTAAATAAAATTTAATTTACTTATAA
GAGAAACAATTCACAACACATGAAGGAGGAGGAGGAACAATGAATAAAGA
GGACTGTATTAATTATCTATGATGTCTGAGAATAATATGAATACACATAT
GAATATTAAGCCGACCATCATTATCATGAAGAATAAGATGTAACATTAAG
AACATCGAATTATAGATCATGCATTACCCACCTTGATCGTCTCGCCACAT
ACTTTTTTATTATTATTCCCCATTTCCACCCTCTAGCTTATGTCCAATTT
TTN
TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAGAAGCAGCTGAGCATCTTACCTCTAAGT
GAGGCTGTACATTGTAGCTAGGTCACCACTGGACAGAAAATTGCCAATCT
GTCCTGCAGACATGTCCTATTCTTGAAAGGACACAATTTACAGGTTAGGA
CAACTTAGTTCTGCTGTGACAGAATAGGCTAGTCCTTAATATTCCTGTTT
TTGTATGGTCTGTTAGATGATCCTGGGCCAGAAGGCTGAAGACAGATGGA
TGCTCCAACCTCCTGACTCTTCAGGGCTGTATAGGTAGGTAGCAGTCTCT
AAAATTTGTTTCAGCTCTTGAAGCTGTGTTGGGCTTCCCATATATTTTCA
GTTAATATTGGTCATTCTCAGATTTCTGATGGGGTTGAAAAACTACTTAC
AGTCTCATGACAACCCAGGCTATTTACATTGAGTGAACAGTTTTGAGAGG
ATGGTTTTCAAATGGCATACAATCTACAGCCAGGACATAAGTTAGGTGTA
AAATTATAAGTATTTTAGTTAGGATAGATGACATTGTTCTATCTTAATGA
CAATAATGATGGACTAGGTGTTAGGTTGATCTTATACCTTATAAATTACA
AAATTGTAATAATTGTGCTCTCTCTCTCTCCATATATATATATATACATA
TATATATATGTGTGTGTGCTGTGTGTTGTGTGCGCCCCTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_a09.b1 MSMg01no525_a09.b1 CHROMAT_FILE:
MSMg01no525_a09.b1 PHD_FILE: MSMg01no525_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:29 2005
         (235 letters)



>mm_chr13_28164091_28164725
          Length = 635

 Score =  358 bits (185), Expect = e-103
 Identities = 221/233 (94%), Gaps = 1/233 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataagtaaataaagcaaatggaacacttcataaatctccaaattataaaaaaaaattaa 60
           ||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||
Sbjct: 202 aataagtaaataaagcaaatgaaacacttcacaaatctccaaattat-aaaaaaaattaa 260

                                                                       
Query: 61  tgatgttttatctgttctccaacattgtatttattttctgtttaaattccagcttttgtt 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  
Sbjct: 261 tgatgttttatctgttctccaacattgtatttattttttgtttaaattccagcttttgag 320

                                                                       
Query: 121 gttaagccctaaaagagttatacaaacgattttcttcccaatcttgatgttggggatacc 180
           |  |||||||||||| |||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 321 gcaaagccctaaaagggttatacaaacgattttcttcccaatcttgatgttggggacact 380

                                                                
Query: 181 cttcatttgcattcatcacctggtgcactgcacagacctaccattgagaactg 233
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 cttcatttgcattcatcacctggtgcactgcacagacctaccaatgagaactg 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)