BAC Information

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BAC

Clone NameMSMg01-525H12
Chromosome13 (Build37)
Map Location 23,158,375 - 23,159,063
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5
Downstream geneV1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525H12.T7 (MSMg01no525_h12.b1)MSMg01-525H12.TJ (MSMg01no525_h12.g1)
ACCAG595298AG595299
length743750
length of high quality
(start - end)		691 (36 - 726)573 (66 - 638)
definitionCHROMAT_FILE: MSMg01no525_h12.b1 PHD_FILE: MSMg01no525_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:06 2005CHROMAT_FILE: MSMg01no525_h12.g1 PHD_FILE: MSMg01no525_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:06 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CGGCCGCTAAACGACTCACTAATTCGAGAGGATGCGCGGAATTCTTCATT
TCTCCTCTTCTTTGCATCTAGCTCTTTATGATGTTCTCTCTCTTCATCAG
ATTCTTCAGCTATTGGCGAGATTAATTAGAGCAGGGTTACATGTAATTCA
CTCTGTGGACCACACATCAGTTCTGGGTCTCTAACACCAGTTTTGGAAAA
GAAGTCTTTAGTTCTCACTTGCTGTTAGGCAGCAGAAGAGCTCAAGGGGT
AAGCACTGGACTCAGCATCCACACAACCAGCCCTTCAGAGCTCACACTTC
CCTACCTCCACCACTCCTTTCCCCTCCCAGGGCCTTTTTACTTCCAGGTG
TGAAGAAATGCACTGGAATAGTAGTGTTTGAAAACTAATATTCAGTAGAC
ACCTTTTCTCCTCTGCAAGAACATCTGTACTTCCATTGGCTGAGGTGGAT
CCGTGATGTGGGAGAAAGTGGGATCCTAATCTTGCCCAGAGATACCCTGT
GATCTTAGCCCTGGGTCTTTCACTCCCCCCCACACCCCGCCCAAAAGGGA
GGCTGTGGTTCCTCTGCAGCATCAGTGTGTGTCTTACTGAAGACTTACTG
TCAGCCCCGGCCTGCCTGGGAATGCTATACAGTCACATTTTCTTCCTTTA
TTTTCTTCAGCCTTAGTGGTAATGTGGCTAAGAGGCTACCTTTAAAGTTA
CAGGCGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGTATGT

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAAAAGCACCT
GAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCA
GGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCA
TTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGT
GGTTCCTCAGAAAATTGGACATAGTACTACCGGATGATCCAGCAATACCT
TTCCTGGGCATATATCCAGAAAATGCCCCAACTGGTAAGAAGGACACATG
CTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAG
AACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAATGTGGTACATCT
ACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTC
CTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACA
TTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTAGATATTAGC
CCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACATGA
AACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_h12.b1 MSMg01no525_h12.b1 CHROMAT_FILE:
MSMg01no525_h12.b1 PHD_FILE: MSMg01no525_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:06 2005
         (691 letters)



>mm_chr13_23158193_23159284
          Length = 1092

 Score = 1239 bits (641), Expect = 0.0
 Identities = 677/689 (98%), Gaps = 1/689 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcttcatttctcctcttctttgcatctagctctttatgatgttctctctcttcatc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 871 gaattcttcatttctcctcttctttgcatctagctctttatgatgttctctctcttcatt 812

                                                                       
Query: 64  agattcttcagctattggcgagattaattagagcagggttacatgtaattcactctgtgg 123
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 811 agattcttcagctattggcgagattaattagagcagggttgcatgtaattcactctgtgg 752

                                                                       
Query: 124 accacacatcagttctgggtctctaacaccagttttggaaaagaagtctttagttctcac 183
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 751 accacacatcagttctgggtctctaacaccagttttgaaaaagaagtctttagttctcac 692

                                                                       
Query: 184 ttgctgttaggcagcagaagagctcaaggggtaagcactggactcagcatccacacaacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ttgctgttaggcagcagaagagctcaaggggtaagcactggactcagcatccacacaacc 632

                                                                       
Query: 244 agcccttcagagctcacacttccctacctccaccactcctttcccctcccagggcctttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 agcccttcagagctcacacttccctacctccaccactcctttcccctcccagggcctttt 572

                                                                       
Query: 304 tacttccaggtgtgaagaaatgcactggaatagtagtgtttgaaaactaatattcagtag 363
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tacttcctggtgtgaagaaatgcactggaatagtagtgtttgaaaactaatattcagtag 512

                                                                       
Query: 364 acaccttttctcctctgcaagaacatctgtacttccattggctgaggtggatccgtgatg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 acaccttttctcctctgcaagaacatctgtacttccattggctgaggtggatccgtgatg 452

                                                                       
Query: 424 tgggagaaagtgggatcctaatcttgcccagagataccctgtgatcttagccctgggtct 483
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 451 tgggagaaagtgggatcctaatcttgcccagagacaccctgtgatcttagccctgggcct 392

                                                                       
Query: 484 ttcactcccccccacaccccgcccaaaagggaggctgtggttcctctgcagcatcagtgt 543
           ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 391 ttcactctcccccacaccccgcccaaaagggaggctgtggtccctctgcagcatcagtat 332

                                                                       
Query: 544 gtgtcttactgaagacttactgtcagccccggcctgcctgggaatgctatacagtcacat 603
           ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 331 gtgtcttactgaagactcactgtcagcccaggcctgcctgggaatgctatacagtcacat 272

                                                                       
Query: 604 tttcttccttta-ttttcttcagccttagtggtaatgtggctaagaggctacctttaaag 662
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tttcttcctttatttttcttcagccttagtggtaatgtggctaagaggctacctttaaag 212

                                        
Query: 663 ttacaggcgtgtgtgtgtgtgtgtgtgtg 691
           |||||||||||||||||||||||||||||
Sbjct: 211 ttacaggcgtgtgtgtgtgtgtgtgtgtg 183


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1092
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1082
Effective search space:   736842
Effective search space used:   736842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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