BAC Information

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BAC

Clone NameMSMg01-525J10
Chromosome13 (Build37)
Map Location 44,221,548 - 44,222,011
singlet/doubletsinglet
Overlap genenone
Upstream genePhactr1, Tbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432, A730030A06
Downstream geneEG637868, EG667157, Jarid2, Dtnbp1, Hsp25-ps1, LOC100039502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525J10.T7 (MSMg01no525_j10.b1)MSMg01-525J10.TJ (MSMg01no525_j10.g1)
ACCAG595388AG595389
length743781
length of high quality
(start - end)
455 (58 - 512)247 (67 - 313)
definitionCHROMAT_FILE: MSMg01no525_j10.b1 PHD_FILE: MSMg01no525_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:15 2005CHROMAT_FILE: MSMg01no525_j10.g1 PHD_FILE: MSMg01no525_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCT
TTTTCCGCGTGATGAATAGGCTGCATTTCCTTCCAAGCGTGGCGTGTGAA
CCCGCCATAATCCAACCCCTTTGTGAATTTCCAGGTAACCTCCCCGTGAC
CGTGTACACAGACCGGTGGGATCAAGGCTGTTGTTTGATTGCTCGAGGTG
GGGGCAGGTGGGGGCCTTCTGCAGGTGTCTGTCCCTGATAAGCTTGTCAG
CAGAAACTGTTTTCAAAGCCCAGCTCCTCTGTCAGGTGTACAGGTGTGCT
TGGGCTCAGCTTACACCCCTGGAGTCAAGGTCACGGTTGCTGGGGTAGAA
GAGCCTCCTCCCCCACCCTCTAGGAATGGATGCTTTTATCAACACACACA
ATTAGCCCCGCTACACCCTGGATCCCGCAGAGGGCAGTGAATAGGTTTCT
CAGCCCACTTGCAAGCAGCTCCTGTGCAAAGGATCCTGGTGCTCATTTCC
CAAGGGGAATCATGCTGTGAAGAATCTTGATGAATGTTTAGGTCACCATG
CTGATAGAATCAGAGACAGATACTGCCTCCCTGTGAGGCTTCATGCCTTT
ATAGAGCGAAAACTAAACAATCAATGACTACTCCATTTGGTGCTGGTAAA
TCTTGTCTGGCATTGCCTCTGTTCTTCTCTTCTCTTCCTAACGTGCATCT
TCCCGACTCTCTTCTGGTATGGGGGATGAGCATAATGCAAATT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTTTTTTTTTTTTTTTTTTTTGCCTTTCCCCAG
ACTTTGGTGTTTTCAGGTTGTGATGGCCAGTTCTTTATTGACAACTTGAT
TAGATTTAAGAGTGGCCACAGCATAAGAGAGGCACACCCTTGGTGTTGTC
TATGAGGTTATTTCCAAAGAGTATTAACTGATCAGGGAAGATCTACCCTG
AAGGGCTGGTGCATGCATGCGTGTGTGTGTATGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGCACATGCGTGTTTATGTATGCGTGTTGTGCCTGACTG
TATCTTACATGAATAAGGTTGAAGCAATTTGAGGACCAGTATTTTCGTTT
CTCTGCCCCCTGACCGTATAGGCTTTTCCATCCTATTGTTTCCCTTGTTC
CCCCTTTTTTTTTGTTTTCCCCCCTATGAGCCCTCTGTATTTTCTAATGT
CCTTATTCAAAATATTTCCTTTTTCCCTTATGCTCCCTCTTTATAGCTTA
AGCACTGTATTTTTTGTCCCCTCTTGTTTTGTTTTTTTACCCCCCCCCCG
CCTATTTTTCCTGTTTTTTTTTCTTGGTGTTTCTTGATATTCTACACCCT
CCCGCCCTTTTTTCTCTCTTATTCCGTTATTCCTGCCCTTTCCCCTGATT
TCACTTTTTTCTCTATCTCATTATTCACCCCCCCGTTTATCGTGCCCTTT
ATTTTCCCTTCTGCTTTTTTTATTTCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_j10.b1 MSMg01no525_j10.b1 CHROMAT_FILE:
MSMg01no525_j10.b1 PHD_FILE: MSMg01no525_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:15 2005
         (455 letters)



>mm_chr13_44221344_44222198
          Length = 855

 Score =  812 bits (420), Expect = 0.0
 Identities = 447/464 (96%), Gaps = 13/464 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   atgaataggctgcatttccttccaagcgtggcgtgtgaacccgccataatccaacccctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 atgaataggctgcatttccttccaagcgtggcgtgtgaacccgccataatccaacccctt 264

                                                                       
Query: 65  tgtgaatttccaggtaacctccccgtgaccgtgtacacagaccggtgggatcaaggctgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgaatttccaggtaacctccccgtgaccgtgtacacagaccggtgggatcaaggctgt 324

                                                                       
Query: 125 tgtttgattgctcgaggtgggggcaggtgggggccttctgcaggtgtctgtccctgataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtttgattgctcgaggtgggggcaggtgggggccttctgcaggtgtctgtccctgataa 384

                                                                       
Query: 185 gcttgtcagcagaaactgttttcaaagcccagctcctctgtcaggtgtacaggtgtgctt 244
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcttgtcagcaggagctgttttcaaagcccagctcctctgtcaggtgtacaggtgtgctt 444

                                                                       
Query: 245 gggctcagcttacacccctggagtcaaggtcacggttgctggggtagaagagcctcctcc 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 gggctcagcttacacccctggagtcaaggtcacagttgctggggtagaagagcctcctcc 504

                                                                       
Query: 305 cccaccctctaggaatggatgcttttatcaacacacacaattagccccgctacaccctgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cccaccctctaggaatggatgcttttatcaacacacacaattagccccgctacaccctgg 564

                                                                       
Query: 365 atcccgcagagggcagtgaataggtttctcagcccacttgcaagcagc------------ 412
           | ||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 565 agcccgcagagggcagtgaataggtttctcagcccacttgcaagcagccacgaactggag 624

                                                       
Query: 413 -tcctgtgcaaaggatcctggtgctcatttcccaaggggaatca 455
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctcctgtgcaaaggatcctggtgctcatttcccaaggggaatca 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)