BAC Information

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BAC

Clone NameMSMg01-526G04
Chromosome13 (Build37)
Map Location 22,479,487 - 22,479,744
singlet/doubletsinglet
Overlap genenone
Upstream geneZkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4
Downstream geneV1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526G04.T7 (MSMg01no526_g04.b1)MSMg01-526G04.TJ (MSMg01no526_g04.g1)
ACCAG595993AG595994
length710740
length of high quality
(start - end)		262 (54 - 315)398 (68 - 465)
definitionCHROMAT_FILE: MSMg01no526_g04.b1 PHD_FILE: MSMg01no526_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:17 2005CHROMAT_FILE: MSMg01no526_g04.g1 PHD_FILE: MSMg01no526_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:17 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GTTAGGAGACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCCAGAGATGCACCTATCCTTGCTGTGTGTGAACTTCC
CTGGGGGCCAAGAGGTTGCAAAGGGCTATTCACCAAAGCTGTCCAACAGC
TTACCACCCTTCTACCTGAGAAGAAATGGAAATATCTCAACAGTCACTGA
AGGAGTCCCAGTGTCTGACAGGGGAGCCAAACACACAGTTCTCTAGTTAA
AAGTTGAAACTCTCAAAAAACAGAGGGGTGAAATATGCAACAGCCCTTTT
TGTGGGTTGGGAGATATTCATGGATTTTTAAAACATCTAAATATGGTCCA
GCTTATGGCATCCTTGTGGAGAAGGGGCTGTTTCCTTCAGAGACCCTCCA
AGAGGGGTACCCAGAATTTTGCCAATCCTTGGGCAACCTATTTAGGTAAT
GGGACAAGAAATGGAGGGGGTCCAAGGGGGGTTCACCTTGGAAACATTTT
TTCTTTTCCCAAAAAGGGTTTAATTTTCCCGGGGAATTTTTTTCCTTTGG
GATTTTTAAAAAAATTTTAAAAGGGCCCTTTTTTTCCCCCCCCAAAACCT
TTTTTTTGGTGGGAAATAATAAGAGTTTTTGTGAAAAAAAACACCCGCGG
GAACATTGTGGGCCCCAAAAAAAAAACCACCCTTTTTTTGTTATATATAA
AAGAAGGAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCACTAAACCCATCTGTTCCTTGGCTATTTTT
GGTTGGGAGATGAGTAATGACTACTTCTAATTCTTTAGGGGTTATGGAAC
TGTTTAGATGGTCTATCTGATTTGGTTTTAATTTTGGCACCTGGTATGTG
TCTAGAAAATTGTCCATTTTATCCATATTTTCCTATTTTGTTGAGCATAT
GCTTTTGTAATAGGATCTGATGATTTTTTGAATTTCCATGTTTTCCATTG
TTATGTCTCCCTTTACATTTCTTACTTTATTAATTTGGATACTTTCTTTT
TGCCCTCTGGTTAGTCTGGCTAAGTGTTTATCTATCTTGTTGATTTTCTC
AAAGAACCAGCTTCTGGTTTTGTTGATTCTTTGTATAGTTCTTTTTGTTT
CTATTTGGTTGATTTCAGCCCTGAGTTTTGATATTTCCTGTAGTTTACTC
CTCTGGGGTGAATTTGCTTCTCTTTGGTTTAGAGTTTTCAGGGGGTGCTT
GTCATGCTGGCTTGTTTAAAGCTCCCTCCCGTTTTCCTTTTTGGGAGGGT
TTTTAAGGCTTGGAATTTTTCCCTTCTAAACACAGGGTTTTCATTGGGGT
TCCCCACAAAATTTTGTGGTAAGAAGGGGCCCTTCCCTTTTTTCTTTTAG
GTTTTTTAAAAAAAGCCTTTTTAAAATTTCTTTTTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_g04.b1 MSMg01no526_g04.b1 CHROMAT_FILE:
MSMg01no526_g04.b1 PHD_FILE: MSMg01no526_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:17 2005
         (262 letters)



>mm_chr13_22479283_22479944
          Length = 662

 Score =  484 bits (250), Expect = e-141
 Identities = 256/258 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccagagatgcacctatccttgctgtgtgtgaacttccctgggggccaagaggtt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccagagaggcacctatccttgctgtgtgtgaacttccctgggggccaagaggtt 264

                                                                       
Query: 65  gcaaagggctattcaccaaagctgtccaacagcttaccacccttctacctgagaagaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcaaagggctattcaccaaagctgtccaacagcttaccacccttctacctgagaagaaat 324

                                                                       
Query: 125 ggaaatatctcaacagtcactgaaggagtcccagtgtctgacaggggagccaaacacaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggaaatatctcaacagtcactgaaggagtcccagtgtctgacaggggagccaaacacaca 384

                                                                       
Query: 185 gttctctagttaaaagttgaaactctcaaaaaacagaggggtgaaatatgcaacagccct 244
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 gttctctagttaaaagttgaaactctcaaaaaacagaggggtgaagtatgcaacagccct 444

                             
Query: 245 ttttgtgggttgggagat 262
           ||||||||||||||||||
Sbjct: 445 ttttgtgggttgggagat 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space:   165209
Effective search space used:   165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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