BAC Information

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BAC

Clone NameMSMg01-529P16
Chromosome13 (Build37)
Map Location 44,202,465 - 44,221,523
singlet/doubletdoublet
Overlap geneA730030A06
Upstream genePhactr1, Tbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432
Downstream geneEG637868, EG667157, Jarid2, Dtnbp1, Hsp25-ps1, LOC100039502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529P16.T7 (MSMg01no529_p16.b1)MSMg01-529P16.TJ (MSMg01no529_p16.g1)
ACCAG598728AG598729
length781753
length of high quality
(start - end)		562 (45 - 606)417 (75 - 491)
definitionCHROMAT_FILE: MSMg01no529_p16.b1 PHD_FILE: MSMg01no529_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:08 2005CHROMAT_FILE: MSMg01no529_p16.g1 PHD_FILE: MSMg01no529_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,202,465 - 44,203,023)(44,221,107 - 44,221,523)
sequence
NTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATCTTTGCCTCCCACCTCACTGTAATAATACATTTGTACATTACA
TATACATACGCATAGGCATATACATATACATACACATATACACTACCCTG
TTGATAGTGGGCTCTGGAGATCCAAACCTCAGATCTTCACACAAGCAAAT
TAGCCACTGAGCCATCTCCCCGCACCCTGACACACAGACTTTGGTTAGCT
AAGTCAGAGCTGTTCACTACTGTGTGCATTGGAAAGGCTGGAGAACAAGA
GCAGAAGGGAGGGCAGCCATGGTTGGCTAAGAAAGGAGCCTTGCTCTAGG
GCATCACCTGGGAAAAGTCAAGACTCCAAATGGCTCTAGCTAACTGTTAC
CTGAGAGGTGGCCCTTTATGTTTCATGGCCTAGGGAGCCTTGGTCAGGGC
TTTTGTGGTCTCATAACATCTCTCGGCTAACATAAAGCATGATAGGGCAG
GTCAGATGGGGAACTCTGAGGATAGTGGTCATTGTAGAGCAAGAAGCAAG
GCTGTAGATTCCTTTCTTTGCCTCTTAGTCCCCTTCTACCTCAACCTGGA
ACCCCAAGACCATAAGAACATATTGTCTAATAGACCCTTCGTGTGCCACA
ATAGAATAAATCTTGAGCAAAATGAAGAATTANGACNATTTCTGGTTGCC
GTCAGAGAACATGAATCAGTGATGTGATTCTTTGCCCTGCTCAGATCTCA
TCGGATCCATGACATCTGTCTCCTCAGAAAA

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGCTTGGTGCTCGCTGGTTTTATTC
CAGATAAAAACCTGTGCCTGTCTAAAGGATAGGGTCAAAACAATTCAGAT
GGAGCGAACCCAGCAGGGGCCTCATGGGGTGGGGGGGATAGGAATTGAAT
ATTTAACCTCCTGTCTAATTCTCCCCAGATCCTATGTTACGGATTTTAGA
GATAACACTAAACCTCAGAGAGTTTACATCACTTTTGGAGAGTACACATC
TAACTGATGGCCAGGCAGGGTTTTATGGCCACTGGCCCTGTTTCCAAGCA
AGTCAACCCAGGAAACATGAGACTTAGGGTCGTGCACTTGGCTTTTGACC
TCTGTGAGTTGGGCGTATATTCAGATGCATCGGCTTATGGAGGGTCAATC
CTACCGCTCATAACTTCAAGTGGTGGGGTAGCATATCCTGGAATAACCCC
AATATAATAATAATAATAATAANNTATATNNATAATATANNNTATAATAT
GGATATGATNATGGGATATATAAATCNAAGACTGCTTTTAGATACAGTGT
CATCCTGAGCTAGNAGCAAGTGGTCCAACGTGTTGCTATGGAAGCATGTC
CGAATAAAGTTAGAGCCATGAATGGTCTCCTGTGGGGCATTGCTGGAAAA
GGGTTTTGGCTCCCCTGGGTAGAAACCAAAATGCTGCTTAACGCCTACGG
AGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_p16.b1 MSMg01no529_p16.b1 CHROMAT_FILE:
MSMg01no529_p16.b1 PHD_FILE: MSMg01no529_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:08 2005
         (562 letters)



>mm_chr13_44202262_44203223
          Length = 962

 Score = 1035 bits (535), Expect = 0.0
 Identities = 553/559 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctatctttgcctcccacctcactgtaataatacatttgtacattacatatacat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctatctttgcctcccacctcactgtaataatacatttgtacattacatatacat 263

                                                                       
Query: 64  acgcataggcatatacatatacatacacatatacactaccctgttgatagtgggctctgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acgcataggcatatacatatacatacacatatacactaccctgttgatagtgggctctgg 323

                                                                       
Query: 124 agatccaaacctcagatcttcacacaagcaaattagccactgagccatctccccgcaccc 183
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 agatccaaaactcagatcttcacacaagcaaattagccactgagccatctccccgtaccc 383

                                                                       
Query: 184 tgacacacagactttggttagctaagtcagagctgttcactactgtgtgcattggaaagg 243
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 384 tgacacacagactttggttagctaagtcagaggagttcactactgtgtgcattggaaagg 443

                                                                       
Query: 244 ctggagaacaagagcagaagggagggcagccatggttggctaagaaaggagccttgctct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctggagaacaagagcagaagggagggcagccatggttggctaagaaaggagccttgctct 503

                                                                       
Query: 304 agggcatcacctgggaaaagtcaagactccaaatggctctagctaactgttacctgagag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agggcatcacctgggaaaagtcaagactccaaatggctctagctaactgttacctgagag 563

                                                                       
Query: 364 gtggccctttatgtttcatggcctagggagccttggtcagggcttttgtggtctcataac 423
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcggccctttatgtttcatggcctagggagccttggtcagggcttttgtggtctcataac 623

                                                                       
Query: 424 atctctcggctaacataaagcatgatagggcaggtcagatggggaactctgaggatagtg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atctctcggctaacataaagcatgatagggcaggtcagatggggaactctgaggatagtg 683

                                                                       
Query: 484 gtcattgtagagcaagaagcaaggctgtagattcctttctttgcctcttagtccccttct 543
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 684 gtcattgtagagcaagaagcaaggctgtagattcctttccttgcctcttagtccccttct 743

                              
Query: 544 acctcaacctggaacccca 562
           |||||||||||||||||||
Sbjct: 744 acctcaacctggaacccca 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no529_p16.g1 MSMg01no529_p16.g1 CHROMAT_FILE:
MSMg01no529_p16.g1 PHD_FILE: MSMg01no529_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:08 2005
         (417 letters)



>mm_chr13_44220907_44221723
          Length = 817

 Score =  775 bits (401), Expect = 0.0
 Identities = 413/417 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcttggtgctcgctggttttattccagataaaaacctgtgcctgtctaaaggataggg 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttgcttggtgctcactggttttattccagataaaaacctgtgcctgtctaaaggataggg 558

                                                                       
Query: 61  tcaaaacaattcagatggagcgaacccagcaggggcctcatggggtgggggggataggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tcaaaacaattcagatggagcgaacccagcaggggcctcatggggtgggggggataggaa 498

                                                                       
Query: 121 ttgaatatttaacctcctgtctaattctccccagatcctatgttacggattttagagata 180
           ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 497 ttgaatatttaacatcctgtctaattctccccagatcctatgttatggattttagagata 438

                                                                       
Query: 181 acactaaacctcagagagtttacatcacttttggagagtacacatctaactgatggccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 acactaaacctcagagagtttacatcacttttggagagtacacatctaactgatggccag 378

                                                                       
Query: 241 gcagggttttatggccactggccctgtttccaagcaagtcaacccaggaaacatgagact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gcagggttttatggccactggccctgtttccaagcaagtcaacccaggaaacatgagact 318

                                                                       
Query: 301 tagggtcgtgcacttggcttttgacctctgtgagttgggcgtatattcagatgcatcggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tagggtcgtgcacttggcttttgacctctgtgagttgggcgtatattcagatgcatcggc 258

                                                                    
Query: 361 ttatggagggtcaatcctaccgctcataacttcaagtggtggggtagcatatcctgg 417
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttatggagggtcaatcctactgctcataacttcaagtggtggggtagcatatcctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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