Query= MSMg01no532_f03.b1 MSMg01no532_f03.b1 CHROMAT_FILE:
MSMg01no532_f03.b1 PHD_FILE: MSMg01no532_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:13 2005
(700 letters)
>mm_chr13_49102847_49103946
Length = 1100
Score = 1025 bits (530), Expect = 0.0
Identities = 566/582 (97%), Gaps = 10/582 (1%)
Strand = Plus / Minus
Query: 5 gaattcaattcccattcaaacacatggtagctcacaaccatctgtgatgagatctgatgc 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gaattcaattccca-gcaaacacatggtagctcacaaccatctgtgatgagatctgatgc 515
Query: 65 ccttttctggtgtgtctgaagtcagcaacagtgtactcatatacataaaaataaataaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ccttttctggtgtgtctgaagtcagcaacagtgtactcatatacataaaaataaataaat 455
Query: 125 cttttaaaaaaacacatatatgctgaacttttcctttgtcttcttgaataccttgagtgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cttttaaaaaaacacatatatgctgaacttttcctttgtcttcttgaataccttgagtgc 395
Query: 185 attataatctttctatctaactatctcattatatctttaaaacctttttttagatctatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 attataatctttctatctaactatctcattatatctttaaaacctttttttagatctatt 335
Query: 245 tattttatgtgtataagtatgtgtatttttgcctgcatgtatgcataatgtaccatatac 304
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 334 tattttatgtgtataagta-------ttttgcctgcatgtatgcataatgtaccatatac 282
Query: 305 atgcaatacctgggggtattagattccccggaactggagttagttactgtgctaggaact 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 atgcaatacctgggggtattagattccccggaactggagttagttactgtgctaggaact 222
Query: 365 gaatctggatcttctacaagagcagcaagtgtcacattgatgtcactgtttattaattct 424
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 221 gaatctggatcttctacaagagcagcaagtgccacattgatgtcactgtttattaattct 162
Query: 425 aaaatgctttgtttacttctgctttattcc-gtgcctgacaagttttgattgtttgttag 483
|||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||
Sbjct: 161 aaaatgctttgtttacttctgcttta-tcctgtgcctgacaagttttgatggtttgttag 103
Query: 484 agatttacttatttattttatgtatataagtacactgtagctatcttcagacacagcaga 543
||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 102 agatttatttatttattttatgtatataagtacactgtagctgtcttcagacacaccaga 43
Query: 544 agagggcatcagatctcattacagatgtttgtgagccaccat 585
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 agagggcatcagatctcattacagatgtttgtgagccaccat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_f03.g1 MSMg01no532_f03.g1 CHROMAT_FILE:
MSMg01no532_f03.g1 PHD_FILE: MSMg01no532_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:13 2005
(683 letters)
>mm_chr13_48960645_48961727
Length = 1083
Score = 1321 bits (683), Expect = 0.0
Identities = 683/683 (100%)
Strand = Plus / Plus
Query: 1 cctgtcttaaaacgatgagttggggggtggatgatgtcacagaagttaagaacacaggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgtcttaaaacgatgagttggggggtggatgatgtcacagaagttaagaacacaggtt 260
Query: 61 gctcttgcagaggactaagttcaattcccagcacccacacggcagctcacaaccatccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcttgcagaggactaagttcaattcccagcacccacacggcagctcacaaccatccat 320
Query: 121 aactccagttccagggaatatgaaaccctattctgactggcataggtatcaggcatgcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactccagttccagggaatatgaaaccctattctgactggcataggtatcaggcatgcac 380
Query: 181 atggtacacatatagacatgtaagcaaaactttcatactttaaataaataaatctaacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggtacacatatagacatgtaagcaaaactttcatactttaaataaataaatctaacaa 440
Query: 241 aaatggtgaacatctgcatgtacatctgcatgtagtgtcagttggaagggcttcttcccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatggtgaacatctgcatgtacatctgcatgtagtgtcagttggaagggcttcttcccc 500
Query: 301 atattcagtatcagagactctgctagcccagacccctcttggccatgtctccttcctgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atattcagtatcagagactctgctagcccagacccctcttggccatgtctccttcctgtg 560
Query: 361 ggacacaagctaggctagccaacaacagagaaggcatgctgagcacggccacaggcccta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggacacaagctaggctagccaacaacagagaaggcatgctgagcacggccacaggcccta 620
Query: 421 ctccatgtctccaggtcccccagatgtaaggctgctccagggaccttaaggctaagtgga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctccatgtctccaggtcccccagatgtaaggctgctccagggaccttaaggctaagtgga 680
Query: 481 cacaatgaaaacccacacaggccatctcggtcggagggaattggacatagaaacagagcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacaatgaaaacccacacaggccatctcggtcggagggaattggacatagaaacagagcc 740
Query: 541 cccaggaagagggacaaacagacacgatgtccccagaagccctaccctctcacttaaatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cccaggaagagggacaaacagacacgatgtccccagaagccctaccctctcacttaaatg 800
Query: 601 gtggttccctacccctgcctcacatccaccccaacagcagccatagggattctgacaaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtggttccctacccctgcctcacatccaccccaacagcagccatagggattctgacaaaa 860
Query: 661 cttggctcaagtagggtaataca 683
|||||||||||||||||||||||
Sbjct: 861 cttggctcaagtagggtaataca 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
