BAC Information

Click to search

BAC

Clone NameMSMg01-532I16
Chromosome13 (Build37)
Map Location 42,948,111 - 43,108,095
singlet/doubletdoublet
Overlap genePhactr1
Upstream geneLOC100039272, Hivep1, Edn1, Hn1-ps4
Downstream geneTbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532I16.T7 (MSMg01no532_i16.b1)MSMg01-532I16.TJ (MSMg01no532_i16.g1)
ACCAG600676AG600677
length736736
length of high quality
(start - end)		661 (52 - 712)653 (82 - 734)
definitionCHROMAT_FILE: MSMg01no532_i16.b1 PHD_FILE: MSMg01no532_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:29 2005CHROMAT_FILE: MSMg01no532_i16.g1 PHD_FILE: MSMg01no532_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:29 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(43,107,704 - 43,108,095)(42,948,111 - 42,948,763)
sequence
ATGGACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTACACAGATTTCGCTGCAGACCATGCTAGCCTTTGTTCA
GTGTGAGTGTACCTAAAAGGGGCTTTCAAATTGCACTCGAGCAAAATCAC
AGGTTGTATAAATTCGCTAATGAAGTTACTAAGCGACTTTCCTAGTTTCC
CCTCCGGAAAAACCCCTATCCCCTCCCCCCTTCCCCTGCTCCCCAACTCA
CCCACTCCCATCCCAGTCTTGGCCTTCCCCTATACTAGGGCCCAGAGCCT
TCACAGGACCTAGGGCCTTTCCTCCCATTGATGATTGACTAGGCCATCCT
CAGCTACATATATAGCTAGAGCTACATGTCCCACCATGTGTTTTCTTTGT
TTGGTGGTTTAGTTCCAAGGAGCTCTGAGGGTACTCATTAGTTCATATTG
ATGTTCCTCCTATGGGGCTTCAGACCCCTTCAACTCCTTGGGTACTTTCT
CTAGCTCCTTCATTGGGGACAATTTTAAAGAATATTTCCTTGAATCAAAT
GAGCATTGCAAACTCCCTAGCTTGTGAGGCGGGTGGTTCGTTGTCATGCA
CTCCTGAATAATGGATGCCCCTCCTCCAAAGTGTGTACCAAATCAATCCT
TCTTTTCTCATACGTTCACCGCCTGAGGTAATTTGTTACAGTGATAGAAA
GCTACCTTATGCTTGGCTGGCCTTCAGCCCCTGCCN

ATGCAATCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAACATGCAGACAGCCTG
GGCCTGCAAGAGCAGAGTTCTCAGGAAGTTAGTCCCTTGGCAACTCTTGG
GTTGCTAAGTGGCTGAACTGTGCATGTGTGCATCTTCCTGGGTCGGCTGC
AGGAGGCAGATTATGGGCCGTTGGAACAGTGAGCCCTCCCGGATCATCTA
CGGAACCTATCCTGAAGATGCACAGGCACACGGAGCTCTAACAGGCTTTC
TCTGATGCAAGGTTTCTCTCCCAGACACTTTCTACCTCTGCAGAGTCCTG
GTGATATTTAATGATTTTTTTAAAAATTATTACTTCTTACTCCTTCCCTG
AAAAATGAAACAGAGAATAGAGCCAGGCAGCAGTTCCCCTCCTTGGCAGA
GATTCAAAGAGACTTAAATCAGGTGCTTACAGCAGCTTTTACTTGCAAAA
TCTAGGAGCATCCTAACTGTCTATCAAATTGTCAGAATCGAGGAAACTCT
GGACTATAACTCTCTCCTCTGATTGGCAACGACCATCACCCCTTTCCTTC
CCCCAGCATGAGCCTCCAGAGGAAATTGCAATTTCTTAGGGCCCATTGTC
TCTAATCTGATAGCACAGCTGGTATCTAGCCAGAAGTGTAGGGGACAGCA
TGGCTCTATGTGCCTAACATGCTAAAATGAAAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_i16.b1 MSMg01no532_i16.b1 CHROMAT_FILE:
MSMg01no532_i16.b1 PHD_FILE: MSMg01no532_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:29 2005
         (661 letters)



>mm_chr13_43107035_43108095
          Length = 1061

 Score =  681 bits (352), Expect = 0.0
 Identities = 382/392 (97%)
 Strand = Plus / Minus

                                                                        
Query: 270  cctcccattgatgattgactaggccatcctcagctacatatatagctagagctacatgtc 329
            |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 1061 cctcccattgatgattgactaggccatcctcagctacatatacagctagagccacatgtc 1002

                                                                        
Query: 330  ccaccatgtgttttctttgtttggtggtttagttccaaggagctctgagggtactcatta 389
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 ccaccatgtgttttctttgattggtggtttagttccaaggagctctgagggtactcatta 942

                                                                        
Query: 390  gttcatattgatgttcctcctatggggcttcagaccccttcaactccttgggtactttct 449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941  gttcatattgatgttcctcctatggggcttcagaccccttcaactccttgggtactttct 882

                                                                        
Query: 450  ctagctccttcattggggacaattttaaagaatatttccttgaatcaaatgagcattgca 509
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 881  ctagctccttcattggggacaatttttaagaatatttccttgaatcaaatgagcattgca 822

                                                                        
Query: 510  aactccctagcttgtgaggcgggtggttcgttgtcatgcactcctgaataatggatgccc 569
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821  aactccctagcttgtgaggcgggtggttcgttgtcatgcactcctgaataatggatgccc 762

                                                                        
Query: 570  ctcctccaaagtgtgtaccaaatcaatccttcttttctcatacgttcaccgcctgaggta 629
            ||||||||||||||| ||||||   |||||||||||||||||||||||| ||||||||||
Sbjct: 761  ctcctccaaagtgtgaaccaaagggatccttcttttctcatacgttcactgcctgaggta 702

                                            
Query: 630  atttgttacagtgatagaaagctaccttatgc 661
            ||||||||||||||| ||||||||||||||||
Sbjct: 701  atttgttacagtgatggaaagctaccttatgc 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no532_i16.g1 MSMg01no532_i16.g1 CHROMAT_FILE:
MSMg01no532_i16.g1 PHD_FILE: MSMg01no532_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:29 2005
         (653 letters)



>mm_chr13_42947911_42948963
          Length = 1053

 Score = 1224 bits (633), Expect = 0.0
 Identities = 648/653 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaacatgcagacagcctgggcctgcaagagcagagttctcaggaagttagtcccttggc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||  ||
Sbjct: 201 acaacatgcagacagcctgggcctgcaagagcagagttctcaggcagttggtccctcagc 260

                                                                       
Query: 61  aactcttgggttgctaagtggctgaactgtgcatgtgtgcatcttcctgggtcggctgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactcttgggttgctaagtggctgaactgtgcatgtgtgcatcttcctgggtcggctgca 320

                                                                       
Query: 121 ggaggcagattatgggccgttggaacagtgagccctcccggatcatctacggaacctatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaggcagattatgggccgttggaacagtgagccctcccggatcatctacggaacctatc 380

                                                                       
Query: 181 ctgaagatgcacaggcacacggagctctaacaggctttctctgatgcaaggtttctctcc 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaagatgcacaggcacacagagctctaacaggctttctctgatgcaaggtttctctcc 440

                                                                       
Query: 241 cagacactttctacctctgcagagtcctggtgatatttaatgatttttttaaaaattatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagacactttctacctctgcagagtcctggtgatatttaatgatttttttaaaaattatt 500

                                                                       
Query: 301 acttcttactccttccctgaaaaatgaaacagagaatagagccaggcagcagttcccctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttcttactccttccctgaaaaatgaaacagagaatagagccaggcagcagttcccctc 560

                                                                       
Query: 361 cttggcagagattcaaagagacttaaatcaggtgcttacagcagcttttacttgcaaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttggcagagattcaaagagacttaaatcaggtgcttacagcagcttttacttgcaaaat 620

                                                                       
Query: 421 ctaggagcatcctaactgtctatcaaattgtcagaatcgaggaaactctggactataact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaggagcatcctaactgtctatcaaattgtcagaatcgaggaaactctggactataact 680

                                                                       
Query: 481 ctctcctctgattggcaacgaccatcacccctttccttcccccagcatgagcctccagag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctcctctgattggcaacgaccatcacccctttccttcccccagcatgagcctccagag 740

                                                                       
Query: 541 gaaattgcaatttcttagggcccattgtctctaatctgatagcacagctggtatctagcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaaattgcaatttcttagggcccattgtctctaatctgatagcacagctggtatctagcc 800

                                                                
Query: 601 agaagtgtaggggacagcatggctctatgtgcctaacatgctaaaatgaaaac 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agaagtgtaggggacagcatggctctatgtgcctaacatgctaaaatgaaaac 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |