Query= MSMg01no533_g20.b1 MSMg01no533_g20.b1 CHROMAT_FILE:
MSMg01no533_g20.b1 PHD_FILE: MSMg01no533_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:38 2005
(552 letters)
>mm_chr13_46946359_46947311
Length = 953
Score = 996 bits (515), Expect = 0.0
Identities = 539/547 (98%), Gaps = 2/547 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttgcctacca-gcactgacctctcctcctcgagccgggggatctcctggatt 62
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttgcctaccaagcactgacctctcctcctcgagccgggggatctcctggatt 263
Query: 63 tcacaaacgctggtcctaggcacttaggatagtgatcccagcaagccagatatggagtgt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcacaaacgctggtcctaggcacttaggatagtgatcccagcaagccagatatggagtgt 323
Query: 123 gggcttttattttagtaaacatttagaaggaagaagtctggagtctgactcatctcactc 182
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gggcttttatttcagtaaacatttagaaggaagaagtctggagtctgactcatctcactc 383
Query: 183 tatataagacgccatgcatcatactggagacctgtattgttctaggactaactccttccg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatataagacgccatgcatcatactggagacctgtattgttctaggactaactccttccg 443
Query: 243 ttggagtccctaatggctactccacagctccttgtgaagccgattgtatcctcactccaa 302
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 444 ttggagtccctaatggctactccacagctcgtggtgaagccgattgtatcctcactccaa 503
Query: 303 agtcggtgatgggagacaccgaaagcctgcatacaaccgagcaaatgcatacagatggag 362
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 504 agtcggtgatgggagacaccgaaagcctgcatacaaccgaacaaatgcatacagatggag 563
Query: 363 gctgggtgtgggagctcaaacctgggatctcagcacttgggaggctgaggcaggaggatt 422
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 564 gctgggtgtgggagctcaaacctgggatctcagcacttgggaggccgaggcaggaggatt 623
Query: 423 gccacaagtcttatgcctgtgtgagtgacatagtaagttctgggtcagcatgggatgcct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gccacaagtcttatgcctgtgtgagtgacatagtaagttctgggtcagcatgggatgcct 683
Query: 483 ctaaatgactcaacagcaaacacacacatagaaagaaaagagggagggagggagggaggg 542
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 684 ctaaatgactcaacagcaaacacacacatagaaagaaaagagggaaggagggagggaggg 743
Query: 543 gagggag 549
||||||
Sbjct: 744 -agggag 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 953
Length adjustment: 10
Effective length of query: 542
Effective length of database: 943
Effective search space: 511106
Effective search space used: 511106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_g20.g1 MSMg01no533_g20.g1 CHROMAT_FILE:
MSMg01no533_g20.g1 PHD_FILE: MSMg01no533_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:38 2005
(587 letters)
>mm_chr13_47081505_47082491
Length = 987
Score = 1098 bits (568), Expect = 0.0
Identities = 580/584 (99%)
Strand = Plus / Minus
Query: 1 tctgagttcaaggccaacctggtctatgtagcaagttccagacctgctctgattatggta 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tctgagttcgaggccaacctggtctatgtagcaagttccagacctgctctgattatggta 810
Query: 61 atgagaccttgtcaaaaaaccaaaaccagaccccaaatccccaagccccaacaaactaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 atgagaccttgtcaaaaaaccaaaaccagaccccaaatccccaagccccaacaaactaca 750
Query: 121 agtagcataaagttaaaaaacaaacaggcataaagttagaagcccccaaaacccaccaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 agtagcataaagttaaaaaacaaacaggcataaagttagaagcccccaaaacccaccaca 690
Query: 181 caaaaatagtataaattcctaacctaggctccactttgagaaacactctctcttggagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 caaaaatagtataaattcctaacctaggctccactttgagaaacactctctcttggagag 630
Query: 241 aggctggaaaacccagcccagcatccgggttctcgcaccgtccttggctcggtctcatcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aggctggaaaacccagcccagcatccgggttctcgcaccgtccttggctcggtctcatcc 570
Query: 301 ttctgctcctacctgcctcgtcttccatgtcatgctctctctcacctttagacgtaacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttctgctcctacctgcctcgtcttccatgtcatgctctctctcacctttagacgtaacca 510
Query: 361 ttttccttctccagcgctcttccaggtgcccctcttgctgactggctcctattcatgcca 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttttccttctccagcactcttccaggtgcccctcttgctgactggctcctattcatgcca 450
Query: 421 ggtcagtggtgacctagctcatcttccatggagggatggaggctgggttctggttgaaag 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 449 ggtcagtggtgacctagctcatcttccatggagggatcgaggctgggttctggttgaaag 390
Query: 481 tcttaccagctcttgtggtctcatctcctttgggcggctgccttcagaaccatcttccat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tcttaccagctcttgtggtctcatctcctttgggcggctgccttcagaaccatcttccat 330
Query: 541 gggatgtactttctgtttgcatagctagctacattcctactccc 584
||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gggctgtactttctgtttgcatagctagctacattcctactccc 286
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
