Query= MSMg01no533_j03.b1 MSMg01no533_j03.b1 CHROMAT_FILE:
MSMg01no533_j03.b1 PHD_FILE: MSMg01no533_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:48 2005
(595 letters)
>mm_chr13_80199288_80200282
Length = 995
Score = 1120 bits (579), Expect = 0.0
Identities = 591/599 (98%), Gaps = 7/599 (1%)
Strand = Plus / Plus
Query: 4 ggaattctttttgataaccacaaaggtatttaaagtaatgctttgtgctttaattctatt 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ggaattctttttgagaaccacaaaggtatttaaagtaatgctttgtgctttaattctatt 256
Query: 64 ttgcaaggaaagttgtacaaaatggattagtatggcttggagacagtgcatattttttgc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttgcaaggaaagttgtacaaaatggattagtatggcttggagacagtgcatattttttgc 316
Query: 124 agtatgtccacttgaaatgcatagattgagagagaccatgatgatataaaggaatttaac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agtatgtccacttgaaatgcatagattgagagagaccatgatgatataaaggaatttaac 376
Query: 184 attattttataaaactatgttttcactgtttacacccaaaatacaaatgctaacaatctc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 attattttataaaactatgttttcactgtttacacccaaaatacaaatgctaacaatctc 436
Query: 244 tgcaaagatacctgaatataattattgctaggaaccatattgtattcatgtttgatcaca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgcaaagatacctgaatataattattgctaggaaccatattgtattcatgtttgatcaca 496
Query: 304 ttcccaattttatctccatcattcacttttcaaatactatcaattacat-------ttac 356
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 497 ttcccaattttatctccatcattcacttttcaaatactatcaattacatgtcacatttac 556
Query: 357 aatatgatttttattcatattaatcagatacaatctattcattcacaatctcagacaggt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aatatgatttttattcatattaatcagatacaatctattcattcacaatctcagacaggt 616
Query: 417 tttaactaacttatttttaattaattgattaattaattaatttttaaccagaaccctgtc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tttaactaacttatttttaattaattgattaattaattaatttttaaccagaaccctgtc 676
Query: 477 ttttaaaacctcacccaatctagaccttaaagataaattacagactatttctttacatca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttttaaaacctcacccaatctagaccttaaagataaattacagactatttctttacatca 736
Query: 537 ttaaaactgtgttgttaaggtattctaaccttcactcctcaagttttttttctaattct 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttaaaactgtgttgttaaggtattctaaccttcactcctcaagttttttttctaattct 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_j03.g1 MSMg01no533_j03.g1 CHROMAT_FILE:
MSMg01no533_j03.g1 PHD_FILE: MSMg01no533_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:48 2005
(586 letters)
>mm_chr13_80314474_80315458
Length = 985
Score = 1064 bits (550), Expect = 0.0
Identities = 577/586 (98%), Gaps = 1/586 (0%)
Strand = Plus / Minus
Query: 1 acaaaattaaacagattgtggaaggaggagagtaagggtctagaaagggtaattatgagg 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 785 acaaaattaaacagattgtggaaggaggagagtacgggtctagaaagggtaattatgagg 726
Query: 61 cttctagctttttgctaacactggaaaataaaaaatcccagtgaagagagaacagttatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 cttctagctttttgctaacactggaaaataaaaaatcccagtgaagagagaacagttatt 666
Query: 121 ctgttaaatccagattgtgcagaaaagaaaactttggcgaataacacatcataaggagaa 180
||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||
Sbjct: 665 ctgttaaatccagattgtgcagaaaagaaaagtttggcgaataagacatcataacgagaa 606
Query: 181 tgaattctggatattggattttgttaatcaatatgttagaattttttaactacatataat 240
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 605 tgaattctggatattggattttgttagtcaatatgttagaa-tttttaactacatataat 547
Query: 241 tgcattaaattaattaccaagttcagaaatttaaacgaattttgaccataatcttgataa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 546 tgcattaaattaattaccaagttcagaaatttaaacgaattttgaccataattttgataa 487
Query: 301 tcataaccaaaaatactaattcagtcacataccactgagtatatgtcaaatttcataatg 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 486 tcataaccaaaaatactaattcagtcaaataccactgagtatatgtcaaatttcataatg 427
Query: 361 attttgataatttactagaaatacaaaatatatgatgcatattatgtaatatattcagtg 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 426 attttgataatttactagaaatataaaatatatgatgcatattatgtaatatattcagtg 367
Query: 421 caatggagcgatgctccctaataactgtacaaagcattatgtatgtacacctgcactact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 caatggagcgatgctccctaataactgtacaaagcattatgtatgtacacctgcactact 307
Query: 481 gttattggctcagactaattttctagataaatctgaatcaatctgtgggtgctggagatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gttattggctcagactaattttctagataaatctgaatcaatctgtgggtgctggagatg 247
Query: 541 gattccaggttcatttaagaattttgatgtaataatatctgagaga 586
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gattccaggttcatttaagaattttgatgtaataatatctgagaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space: 561600
Effective search space used: 561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
