BAC Information

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BAC

Clone NameMSMg01-534P05
Chromosome13 (Build37)
Map Location 8,451,415 - 8,451,889
singlet/doubletsinglet
Overlap geneAdarb2
Upstream geneLOC791083, LOC382722
Downstream geneEG666941, Wdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534P05.T7 (MSMg01no534_p05.b1)MSMg01-534P05.TJ (MSMg01no534_p05.g1)
ACCAG602515AG602516
length730762
length of high quality
(start - end)
469 (43 - 511)474 (72 - 545)
definitionCHROMAT_FILE: MSMg01no534_p05.b1 PHD_FILE: MSMg01no534_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:37 2005CHROMAT_FILE: MSMg01no534_p05.g1 PHD_FILE: MSMg01no534_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTAGCTCTGAGCCACATTTTTTAATGGGGTTATTTGATTTTCT
GGGGTCCAGCTTCTTGAGCACTTTGCATATATTGGATATTAGTCCACTAT
CTGATTTAGGATAGGTAAGGATCCTTTCCCAATCTGCTGGTGGCCTTTTT
ATCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAG
GTCGCATTTGCCTATTCTCAATCTTACAGCACAAGCCATTGCTGTTCTAT
TCAGGAATTTTCCCCCTGTGCCCATATCTTTGAGGCTTTTCCCCACTTTC
TCCTCTGTAAGTTTAACTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTTGCATTC
TTCTACATGATAACCGCCAGTTGTGCCAGTACTATTTGTTAAAATTCTGG
TCTTTTTTTCCACTGGGAAGGGGTTTTTAACTTCCCTTTGTGCCAAAGAA
ATCCAGGGTCCCCCTAGGGGGAGTGGGGGGGGGGTCTTTTTTTTGGGGGG
GGGTTCTCAAATATTTATTTTCTTCTGGTTGTTGCCCCTTTTTTGGTGGT
GGGCGCGGTTTTTTATACCTCTACCAATATGGTGGGGGGGGTTTTTTTTT
TCTTCAAACAGAACCGGGTTATTGGCNNAG
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTTTTCTAATCCTCCTGAAATGCCCAGT
GGGAAGAAATGATATTTATGGAGGATTGTGTGAAGGACACAAAGTCCATA
AATTCCCCTGGCTGGTTTACATTTTACCCTTGGATCAAAACAGACTGTGA
GAGAGTGATATATTCTAACCCTTTTGATTGAGACCCTCTGTGGGATTGTT
TCCTGCTAAATTGATTTTTTTATTATTTTTCTTTTTAATTAAATTAAGTG
TAATTGTGAGAAACAGAAAAGCCAGTGTGTTCGAGAGAGAGGGAGGGGGT
GTAGAGAGCCCATTTATTCTTAGTCCTGAGTTCTGCCCTCAGGGATTCTA
ATTGGGTGCGGCCCAGAACTCTTGTTTTTAATCAAGCTTTGTAATTTCAC
TACAACTATCTAGAAAATACATTGTGGATGAAACTACCCTTGACAAGCTA
GAGAAATATCTGGATAATTAACTCCAGAAAAAATATGTATGTATGCATGC
AACTTTCAGGAAGTCTCCAAAGTGGTTTTTCTGGTAGGAAACATTACGGG
ACCCCCCTTTTTTCTTTGGAAAAAACACCCTCACATTTTTTTTGTGGATA
AATCGATGAAATTACACCCTTCTTTTTAAAAAACGGGGGGGAAAGCCCAA
ACATTTTTGGCTTTCCCCTCCCGTTTTTTTTTCTCTCCCTACCTTTTTTT
TCTCTCCATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_p05.g1 MSMg01no534_p05.g1 CHROMAT_FILE:
MSMg01no534_p05.g1 PHD_FILE: MSMg01no534_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:37 2005
         (474 letters)



>mm_chr13_8451215_8452088
          Length = 874

 Score =  895 bits (463), Expect = 0.0
 Identities = 472/475 (99%), Gaps = 1/475 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttttctaatcctcctgaaatgcccagtgggaagaaatgatatttatggaggattgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttttctaatcctcctgaaatgcccagtgggaagaaatgatatttatggaggattgtgt 260

                                                                       
Query: 61  gaaggacacaaagtccataaattcccctggctggtttacattttacccttggatcaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaggacacaaagtccataaattcccctggctggtttacattttacccttggatcaaaac 320

                                                                       
Query: 121 agactgtgagagagtgatatattctaacccttttgattgagaccctctgtgggattgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agactgtgagagagtgatatattctaacccttttgattgagaccctctgtgggattgttt 380

                                                                       
Query: 181 cctgctaaattgatttttttattatttttctttttaattaaattaagtgtaattgtgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgctaaattgatttttttattatttttctttttaattaaattaagtgtaattgtgaga 440

                                                                       
Query: 241 aacagaaaagccagtgtgttcgagagagagggagggggtgtagagagcccatttattctt 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacagaaaagccagtgtgtgcgagagagagggagggggtgtagagagcccatttattctt 500

                                                                       
Query: 301 agtcctgagttctgccctcagggattctaattgggtgcggcccagaactcttgtttttaa 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 agtcctgagttctgccctcagggattctaattgggtgtggcccagaactcttgtttttaa 560

                                                                       
Query: 361 tcaagctttgtaatttcactacaactatctagaaaatacattgtggatgaaactaccctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaagctttgtaatttcactacaactatctagaaaatacattgtggatgaaactaccctt 620

                                                                  
Query: 421 gacaagctagagaaatatctggataattaactccagaaaaaa-tatgtatgtatg 474
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 gacaagctagagaaatatctggataattaactccagaaaaaaatatgtatgtatg 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)