TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCCAAATCATTTGACCAATATTTCAAGAACATATTTTTTCTAATT
CAATAGGAACCCAGCATTATAATTGAGAACTTAAACACTTTAGGAATTCT
ACAACATAGGGGAAGAGATTGTAGGATACTATGGCCTTTTTTTTTTTTTC
AGAAAAAATAATCCCTCTTTTCTCAAAGAAATTGGTGAAATTTTATCCAT
AAAATTCGCTGTAATTCCAAGGTATCATTACAAAAGCAAAACAAAACAAA
GCACTTAGATTCAGCACTTGAACTTTGAGACATGAAAACAAAGTAGTTAC
ACATCCCAATTTGATAAATGTTTACAAATATTCACAATATTTCTGTGTGC
TCAGTACATACAGAAGGTGTTGACAATATAAACACTAGGAATGAAAGAAA
ACTGCTCTTTTATAATTGTGACAATTACACACTTAAGAAGAGGATTTGAG
TCACTTCAATGTACAGTTCAGCAGCATGGAGAATGGCTTCGATGATTCAC
AGTTCTCAACTACTGTCTTCCTCTGGATGATCAAGAAGAGTAAGTCTGCC
CACCAGACATGCATGTTTCTCAAATCTCAGCCACTCCAGTCTACTTTCCA
TTAGTCTGTCTGAACACACTATTCGTTTTTTGTAAGCTGGACACAGATTC
TTTAAGAATTTATGCATAGGCTAGCATGCGCCAGAGTTGTATTCTTTTTT
TGTGGCTGAATATTCCAT

AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGGTTTCTCCATCTATGGTAATTGAA
AGTTTGGCTGGGTATAGTAGCCTGGGCTGGCATTTGTGTTCTCTTAGTGT
CTGTACACCATCTGTCCAGTATCTTCTGGCTTTCATAGTCTTTGGTGAAA
AATCTGGTGTAATTCTGATAGGCCTGCCTTTATATGTTACTTGACTTTTT
TCCCTTACTGTTTTTAATATTCTCTCTTTAGTGCATTTGTTGTTCTGATT
ATTATGTGTTGGTAGGAATTCTTTTCTGGTCCAGTCTATTTGGAATTCTG
TAGGCTTCTTGTATTTCGAGATGGGCATCTCTTTCTTTAGGTTTGGGAAG
TTTTCTTCTATAATTTTGTTGAAGATATTTGCTGGCCCTTTAAGTTGAAA
AATCTTCCTTCTCATCTACTCCTATTATCCGTAGGTTTGGTCTTCTCATT
GTGTCCTGGATTTCCTGGATGTTTTGAGTTAGGATCTTTTTGCATTTTGC
ATTGTCTTTGATTGTTGTGCTGATGTTCTCTATGGAATCTTCTGCACCTG
AAATTCTCTCTTCCATCTCTTATATTCTGTTGCTGATGCTCGAGTCTATG
GTTCCAGATTTCTTTCCTAGGGTATCTATCTCCAGCGTAGCCTCACTTTG
GGTTTTCTTTATTGTGTCTACTTTGCTTTTTAGGTCTAGTATGGTTTTGT
TCATTTCCATCAC

Query= MSMg01no535_g03.b1 MSMg01no535_g03.b1 CHROMAT_FILE:
MSMg01no535_g03.b1 PHD_FILE: MSMg01no535_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:11 2005
         (679 letters)



>mm_chr13_105616092_105617174
          Length = 1083

 Score = 1239 bits (641), Expect = 0.0
 Identities = 668/679 (98%), Gaps = 4/679 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacccaaatcatttgaccaatatttcaagaacatattttttctaattcaatagga 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 883 gaattcacccaaatcatttgaccaatatttcaagaacatattttttctaattaaatagga 824

                                                                       
Query: 65  acccagcattataattgagaacttaaacactttaggaattctacaacataggggaagaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 acccagcattataattgagaacttaaacactttaggaattctacaacataggggaagaga 764

                                                                       
Query: 125 ttgtaggatactatggcc----tttttttttttttcagaaaaaataatccctcttttctc 180
           ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ttgtaggatactatggcctttttttttttttttttcagaaaaaataatccctcttttctc 704

                                                                       
Query: 181 aaagaaattggtgaaattttatccataaaattcgctgtaattccaaggtatcattacaaa 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 703 aaagaaattggtgaaattttatccataaaatttgctgtaattccaaggtatcattacaaa 644

                                                                       
Query: 241 agcaaaacaaaacaaagcacttagattcagcacttgaactttgagacatgaaaacaaagt 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 643 agcaaaacaaaacaaagcacttagattcagcacttaaactttgagacatgaaaacaaagt 584

                                                                       
Query: 301 agttacacatcccaatttgataaatgtttacaaatattcacaatatttctgtgtgctcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 agttacacatcccaatttgataaatgtttacaaatattcacaatatttctgtgtgctcag 524

                                                                       
Query: 361 tacatacagaaggtgttgacaatataaacactaggaatgaaagaaaactgctcttttata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tacatacagaaggtgttgacaatataaacactaggaatgaaagaaaactgctcttttata 464

                                                                       
Query: 421 attgtgacaattacacacttaagaagaggatttgagtcacttcaatgtacagttcagcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 attgtgacaattacacacttaagaagaggatttgagtcacttcaatgtacagttcagcag 404

                                                                       
Query: 481 catggagaatggcttcgatgattcacagttctcaactactgtcttcctctggatgatcaa 540
           |||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 403 catggagaatggctgcgatgatacacagttctcaactactgtcctcctctggatgatcaa 344

                                                                       
Query: 541 gaagagtaagtctgcccaccagacatgcatgtttctcaaatctcagccactccagtctac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gaagagtaagtctgcccaccagacatgcatgtttctcaaatctcagccactccagtctac 284

                                                                       
Query: 601 tttccattagtctgtctgaacacactattcgttttttgtaagctggacacagattcttta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tttccattagtctgtctgaacacactattcgttttttgtaagctggacacagattcttta 224

                              
Query: 661 agaatttatgcataggcta 679
           ||||| |||||||||||||
Sbjct: 223 agaatctatgcataggcta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1083
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1073
Effective search space:   717837
Effective search space used:   717837
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)