Query= MSMg01no535_k10.b1 MSMg01no535_k10.b1 CHROMAT_FILE:
MSMg01no535_k10.b1 PHD_FILE: MSMg01no535_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:31 2005
(723 letters)
>mm_chr13_24657744_24658867
Length = 1124
Score = 1241 bits (642), Expect = 0.0
Identities = 687/720 (95%), Gaps = 29/720 (4%)
Strand = Plus / Plus
Query: 5 gaattc-aactatttgtgacccagccctggttttgtatctcatagggaggtggggaaagt 63
|||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaactatttgggagtcagccctggttttgtatctcatagggaggtggggaaagt 264
Query: 64 tattccacagggaagggaagtggagctatctgcgatagaagcctggaacagtgaatgaat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattccacagggaagggaagtggagctatctgcgatagaagcctggaacagtgaatgaat 324
Query: 124 gaggccattcagaggccctgggaaaggctgtatgcctgctctccacacctctgggcctgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaggccattcagaggccctgggaaaggctgtatgcctgctctccacacctctgggcctgg 384
Query: 184 cctctctctcccacactggttggcccagtgatatgcactctggtgtgatttgaagtcagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctctctctcccacactggttggcccagtgatatgcactctggtgtgatttgaagtcagg 444
Query: 244 aggtaggctaaagtatggaaggaagtgtcagggcagaggcactgtaatgggtcacacctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggtaggctaaagtatggaaggaagtgtcagggcagaggcactgtaatgggtcacacctg 504
Query: 304 aaatcccagcatatcagaagctaaggcaagattgttgtgagtttaagtctaacctatatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatcccagcatatcagaagctaaggcaagattgttgtgagtttaagtctaacctatatt 564
Query: 364 acatagtcagtactaagctagcctgggctactgagtgagaccctatttcaagacaccatg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acatagtcagtactaagctagcctgggctactgagtgagaccctatttcaagacaccatg 624
Query: 424 gactggaaagatggttttgtcaataaagatgtctgccaccaagtctaatgacctgagttc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gactggaaagatggttttgtcaataaagatgtctgccaccaagtctaatgacctgagttc 684
Query: 484 cattataggggacttgcatggtactagaatagaaatgactctggaaaattgccctctgat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cattataggggacttgcatggtactagaatagaaatgactctggaaaattgccctctgat 744
Query: 544 ctctatacatgtgcccattcccacaattcatgcatacatacatacatacatacatacata 603
||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 745 ctctatacatgtgcccattcccacaattcatgcatacatacatacatacgtac------- 797
Query: 604 catacatacatacatacatacgtaaatgtaactttaaaatattaaatacagaatttaaag 663
|||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ---------------------gtaaatgtaactttaaaatattaaatacagaatttaaag 836
Query: 664 gtacatccatagcatccagggactcttgtgaccagctcttagtcctgcttgtacccctgt 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 gtacatccatagcatccagggactcttgtgaccagctcttagtcctgcttgtacccctgt 896
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1124
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1114
Effective search space: 794282
Effective search space used: 794282
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no535_k10.g1 MSMg01no535_k10.g1 CHROMAT_FILE:
MSMg01no535_k10.g1 PHD_FILE: MSMg01no535_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:31 2005
(294 letters)
>mm_chr13_24816164_24816857
Length = 694
Score = 493 bits (255), Expect = e-144
Identities = 284/294 (96%)
Strand = Plus / Minus
Query: 1 ttcgagctgagggcgggacgggtgaagaattggttcacaaagaaatcttctgtttccaca 60
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 494 ttcgagctgggggcgggacgggtgaagaattggttcacaaagaagtcttctgtttccaca 435
Query: 61 agggactgcatttggggggttgggggggatgggaggagaaaaaggatagagtanggacaa 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
Sbjct: 434 agggactgcatttggggggttggggaggatgggaggagaaaaaggatagagtagggacga 375
Query: 121 ggagctctcagctggagctacgccagggttaaaaccagggctcctgcttcatccttcaca 180
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ggtgctctcagctggagctacaccagggttaaaaccagggctcctgcttcatccttcaca 315
Query: 181 gcacacaagtccagtggaacccagataggctgctgcaccctacgtgtctacctgtgtaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gcacacaagtccagtggaacccagataggctgctgcaccctacgtgtctacctgtgtaaa 255
Query: 241 gtctgtagcatatacagggagacgctcagcagcggtgagtcacagcacaccagg 294
|||||||||| | ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 254 gtctgtagcagagacagggagacgctcagcagcgatgagtcacagcacaccagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space: 195225
Effective search space used: 195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
