BAC Information

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BAC

Clone NameMSMg01-535L14
Chromosome13 (Build37)
Map Location 68,724,893 - 68,856,927
singlet/doubletdoublet
Overlap geneFastkd3, 1700001L19Rik, Adcy2
Upstream geneA530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233
Downstream geneLOC666205, LOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535L14.T7 (MSMg01no535_l14.b1)MSMg01-535L14.TJ (MSMg01no535_l14.g1)
ACCAG603106AG603107
length772778
length of high quality
(start - end)		673 (34 - 706)632 (74 - 705)
definitionCHROMAT_FILE: MSMg01no535_l14.b1 PHD_FILE: MSMg01no535_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:37 2005CHROMAT_FILE: MSMg01no535_l14.g1 PHD_FILE: MSMg01no535_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,724,893 - 68,725,549)(68,856,296 - 68,856,927)
sequence
ACTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCTGTGGCATTGTTCTGACTTTCCACTCACTATCCGAGAGTCTCTTT
AAAAACCCGTGGACTAGATTCTTAAATGGGTGGGTTGAGGTGGGGCGGGG
GTTCCTGAATGAATTGTGGATGCAGGCAGACGTTTCCCCCTAGCAGGGAT
ACACATCATCTGTGCCCAGCAGTAGGTGAAGGGGACAGCCATGACTTCCA
CGCCTCAGCTGTAGTGTGCTTGGTCCTTTGAAACCTTGTCATTTCTCTCC
TGAGAGGGTCTGCCCTGCCACATGTTCAAATTATATTTGAATGAGCAGTA
ATGGCCTTGATCACGCTTTCAGATGTTTATCGTTAATTTAGATTTCCTAC
AAATCGTCTTTCTACAGCTTTAATTCAGTATGAGACAAGGGTTAACAGAA
CTGTTATACATGTTTTCTTTAATTTTTATTTTTTAAAGCAATATTGGTGA
TTTTGCTATGCAGAAGCTTTAAAAACTTACAGACAGATCTCTGTAGCTTC
TGAGTTTCCTATCTCAGTAACATCTCATTTCTGTTTTGCCACACATTTGA
ATCAGCTTTTAAAACGACATTTCCTATCTTAACATACTTACAACTTAGGG
ATTTGTTTGTGTAATTTAAAAAATTATGTTATTTGTGTAGGAATCTGCAT
ATTTGGCCACTGCACAATGTGTGTCAACATGCTTATCTCACAGTCTTCTG
TGTGCATGTATGTGTGGTGGTN

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAGAAA
CCCTGTCTCAAAAACAAAACAAAAACAAAAAAAAGGCAAGATCCCATACA
GCTTCCAGATAGATGCTTCGGGCGGATGCCTTGAGTGCTTCTGTCATAAG
TTTCCCAACATTTTCCAAATGAAGTAGAAAAGAGTCGAATGCTGTTCTTG
AAACAAGACAGGGAGCGGCTCACAGGGAAGCCCTTCAGCCTCTGGGTTTG
GTTGGCATTGGTTATGTTTTGTTGTTCCCTAACCATTAAATCTTGTTGGG
TTTGGTAGGATCCTCTGTTCTTCTGGTTTCCACCTACTGATTCCATTGGA
ACTGGATTACCAATTAGTGTTTCTCTCTATTTATACAAAGCAGTGATTTC
TCTGCAGATTGCCATGTGTTGAGTTCAGCATCAGACCAACAGACACAGCA
AACTCCCTTTTCCAAGTACATGCATGAAGTGCAAGACCAACACACTCACT
TCTGTCTGATCTGAGTCCAGCTCCACTCCCAAGATCTGATTAATCTCTGC
AGTACCCAAGGGGCCATACATCCTAACACAGCCATGTTAGAGGCCAGGGC
TTCAACATATGACATTGAGGAAGACACAAACATTTAAAACATTTAATCCA
AAATAGAATGGCTGAGTCTCTCCCTCCACGGCTTCTGTCATTTCAGAACG
TGCATTTATTCTTTCACTGGAGAATGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_l14.b1 MSMg01no535_l14.b1 CHROMAT_FILE:
MSMg01no535_l14.b1 PHD_FILE: MSMg01no535_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:37 2005
         (673 letters)



>mm_chr13_68724677_68725749
          Length = 1073

 Score = 1270 bits (657), Expect = 0.0
 Identities = 657/657 (100%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattctgtggcattgttctgactttccactcactatccgagagtctctttaaaaacccg 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattctgtggcattgttctgactttccactcactatccgagagtctctttaaaaacccg 276

                                                                       
Query: 77  tggactagattcttaaatgggtgggttgaggtggggcgggggttcctgaatgaattgtgg 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tggactagattcttaaatgggtgggttgaggtggggcgggggttcctgaatgaattgtgg 336

                                                                       
Query: 137 atgcaggcagacgtttccccctagcagggatacacatcatctgtgcccagcagtaggtga 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 atgcaggcagacgtttccccctagcagggatacacatcatctgtgcccagcagtaggtga 396

                                                                       
Query: 197 aggggacagccatgacttccacgcctcagctgtagtgtgcttggtcctttgaaaccttgt 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aggggacagccatgacttccacgcctcagctgtagtgtgcttggtcctttgaaaccttgt 456

                                                                       
Query: 257 catttctctcctgagagggtctgccctgccacatgttcaaattatatttgaatgagcagt 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 catttctctcctgagagggtctgccctgccacatgttcaaattatatttgaatgagcagt 516

                                                                       
Query: 317 aatggccttgatcacgctttcagatgtttatcgttaatttagatttcctacaaatcgtct 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aatggccttgatcacgctttcagatgtttatcgttaatttagatttcctacaaatcgtct 576

                                                                       
Query: 377 ttctacagctttaattcagtatgagacaagggttaacagaactgttatacatgttttctt 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttctacagctttaattcagtatgagacaagggttaacagaactgttatacatgttttctt 636

                                                                       
Query: 437 taatttttattttttaaagcaatattggtgattttgctatgcagaagctttaaaaactta 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 taatttttattttttaaagcaatattggtgattttgctatgcagaagctttaaaaactta 696

                                                                       
Query: 497 cagacagatctctgtagcttctgagtttcctatctcagtaacatctcatttctgttttgc 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 cagacagatctctgtagcttctgagtttcctatctcagtaacatctcatttctgttttgc 756

                                                                       
Query: 557 cacacatttgaatcagcttttaaaacgacatttcctatcttaacatacttacaacttagg 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 cacacatttgaatcagcttttaaaacgacatttcctatcttaacatacttacaacttagg 816

                                                                    
Query: 617 gatttgtttgtgtaatttaaaaaattatgttatttgtgtaggaatctgcatatttgg 673
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gatttgtttgtgtaatttaaaaaattatgttatttgtgtaggaatctgcatatttgg 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no535_l14.g1 MSMg01no535_l14.g1 CHROMAT_FILE:
MSMg01no535_l14.g1 PHD_FILE: MSMg01no535_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:37 2005
         (632 letters)



>mm_chr13_68856181_68857212
          Length = 1032

 Score = 1222 bits (632), Expect = 0.0
 Identities = 632/632 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggctacacagagaaaccctgtctcaaaaacaaaacaaaaacaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 caggacagccagggctacacagagaaaccctgtctcaaaaacaaaacaaaaacaaaaaaa 688

                                                                       
Query: 61  aggcaagatcccatacagcttccagatagatgcttcgggcggatgccttgagtgcttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aggcaagatcccatacagcttccagatagatgcttcgggcggatgccttgagtgcttctg 628

                                                                       
Query: 121 tcataagtttcccaacattttccaaatgaagtagaaaagagtcgaatgctgttcttgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tcataagtttcccaacattttccaaatgaagtagaaaagagtcgaatgctgttcttgaaa 568

                                                                       
Query: 181 caagacagggagcggctcacagggaagcccttcagcctctgggtttggttggcattggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 caagacagggagcggctcacagggaagcccttcagcctctgggtttggttggcattggtt 508

                                                                       
Query: 241 atgttttgttgttccctaaccattaaatcttgttgggtttggtaggatcctctgttcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atgttttgttgttccctaaccattaaatcttgttgggtttggtaggatcctctgttcttc 448

                                                                       
Query: 301 tggtttccacctactgattccattggaactggattaccaattagtgtttctctctattta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tggtttccacctactgattccattggaactggattaccaattagtgtttctctctattta 388

                                                                       
Query: 361 tacaaagcagtgatttctctgcagattgccatgtgttgagttcagcatcagaccaacaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tacaaagcagtgatttctctgcagattgccatgtgttgagttcagcatcagaccaacaga 328

                                                                       
Query: 421 cacagcaaactcccttttccaagtacatgcatgaagtgcaagaccaacacactcacttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cacagcaaactcccttttccaagtacatgcatgaagtgcaagaccaacacactcacttct 268

                                                                       
Query: 481 gtctgatctgagtccagctccactcccaagatctgattaatctctgcagtacccaagggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtctgatctgagtccagctccactcccaagatctgattaatctctgcagtacccaagggg 208

                                                                       
Query: 541 ccatacatcctaacacagccatgttagaggccagggcttcaacatatgacattgaggaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ccatacatcctaacacagccatgttagaggccagggcttcaacatatgacattgaggaag 148

                                           
Query: 601 acacaaacatttaaaacatttaatccaaaata 632
           ||||||||||||||||||||||||||||||||
Sbjct: 147 acacaaacatttaaaacatttaatccaaaata 116


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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