TTTTCTACXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGC
GGAATTCACTAAAATTTCGGTGCTTGGCCTGTTGCTACACATTTCAAAAC
TAGAATAAATCAGCACTTTTGTACGAGAAATGCTTTTTGGGAACCCCAGC
CTTTCTTTCTAAGTTCAAATATCCCAATTCTTTAATCTTCTACTTTACTT
ACATTTCTTAAAACAAAGTCTCTCCTTCCAGTTTCAAGAAGATTAGACTT
TCTCTGGAACCAGATTAAAAACCCAAGACAAGATATAATGCTCCCATTTC
GATCAGCTGAAATAAATATAACTTTATTGCTTTTCTTCAAGCACTGGCAA
ATTCTTTATTGTCTTCAAGAGCCAATAACTTGAGCTCACTATTATTTGAG
CTTTTTATTAGTAAATGACTTTTTATAAGTATAGTGATTCTGCTGGTGTT
TATAGGTCCAGAGTTCAGATCCCAGAACCCAAGTTAACTATAAAATGCAT
GGTGGCTGGTTATGGAATGGATCCCCGAGTGGGGTAGTCTCTGGATAGTC
TATCCTTTCATCTTAGCTCCAAACTTTGTCTCTGTAACTCCTTTCATGGG
TTTTTTGTTCCCTATTCTAAGGAGGAATGAAGTATCCACCCATTGGTCTT
CCCTCTTCTTGATTTTCTTGTGCTTTGCAAATTGAATCTTGGGTGTTCTA
TGTTTCTGGGCTAATATCCACTTATCAGCGAGTGCATGTCTAATGACTTC
TTTTGTGAGTGGGTG

CCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTGTAAATCTTGTCAAAAGCCA
ATATGTTGGGAGATCATAGGCCCTCGGGGAGAACCTGCTGCTAGTGTTTT
GCCAAATGTACTTGTTGTCCAATTGCCTTCCATGTATTTATGTTCAGCCT
TGGTCAGTGTTCTCGTTTGCTGTCTGTTTCTGTGATATAATTCTCTGACT
GAAATCAACGTGGGGAGCAGTTTATTTGGTCTACCTTTCCAGGCTGCAGG
CCACTGCCGAGGGAAGTCAGACTAGGAATTGAGGTGGAAACTGTGGAGGG
TTGCAGCTTACTGGCTTGCTCTCCAGCTCCCTTAGTTGGCATTCTTAAGC
ATCCCAAACCCACCTGCCCATAGTGCACTGCTCTCTCTAACATCAATCGC
CAATCAAAAAAAAAAAATTTCCACAGATGTGGCCACAGGCCAATCTAATC
GAGGTGATTCTCCAACCAAGGTTCTGTCTTCTCAAGTGACATTAAAAGAA
CTAACCAGTGCAGTTGGAGAAACTTCTTTTGGCAGAGGCAATGGTTAATG
CAGAGATTCCTCACTGCTCAAAATGCTAAGAAAGGTGACTATCAGATACT
CAGCCCCAGATGTGACATCAGCGTCACTCTTACCCGTAACCCACCCAGTG
CCCAGGGGACATCACAGAAGAAGGGTCAGCAAGAAAGTTTACCCTGGAGG
ATTGAGAGGAGACCCACCAAATGGCATCTTCT

Query= MSMg01no536_c11.b1 MSMg01no536_c11.b1 CHROMAT_FILE:
MSMg01no536_c11.b1 PHD_FILE: MSMg01no536_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:11 2005
         (623 letters)



>mm_chr13_41494497_41495520
          Length = 1024

 Score = 1087 bits (562), Expect = 0.0
 Identities = 606/622 (97%), Gaps = 5/622 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactaaaatttc--ggtgcttggcctgttgctacacatttcaaaactagaataaa 62
           |||||||||||||  ||  || |||||||||||||||||||||||||||||||||| |||
Sbjct: 653 gaattcactaaaa--tcaaggagcttggcctgttgctacacatttcaaaactagaagaaa 596

                                                                       
Query: 63  tcagcacttttgtacgagaaatgctttttgggaaccccagcctttctttctaagttcaaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tcagcacttttgtacgagaaatgctttttgggaaccccagcctttctttctaagttcaaa 536

                                                                       
Query: 123 tatcccaattctttaatcttctactttacttacatttcttaaaacaaagtctctccttcc 182
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tatcccaattctttaatcttcaactttacttacatttcttaaaacaaagtctctccttcc 476

                                                                       
Query: 183 agtttcaagaagattagactttctctggaaccagattaaaaacccaagacaagatataat 242
           |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 475 agtttcaagaagattagattttctctggaaccagattaaaagcccaagacaagatataat 416

                                                                       
Query: 243 gctcccatttcgatcagctgaaataaatataactttattgcttttcttcaagcactggca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gctcccatttcgatcagctgaaataaatataactttattgcttttcttcaagcactggca 356

                                                                       
Query: 303 aattctttattgtcttcaagagccaataacttgagctcactattatttgagctttttatt 362
           |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 355 aattttttattgtcttcaagagccaataacttcagctcactattatttgagctttttatt 296

                                                                       
Query: 363 agtaaatgactttttataagtatagtgattctg-ctggtgtttataggtccagagttcag 421
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 295 agtaaatgactttttataagtatagtgattctgactggtgtttataggtccagagttcag 236

                                                                       
Query: 422 atcccagaacccaagttaactataaaatgcatggtggctggttatggaatggatccccga 481
           ||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 235 atcccagaacccatgttaactataaaatgcatggtggctgattatgggatggatccccga 176

                                                                       
Query: 482 gtggggtagtctctggatagtctatcctttcatcttagctccaaactttgtctctgtaac 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gtggggtagtctctggatagtctatcctttcatcttagctccaaactttgtctctgtaac 116

                                                                       
Query: 542 tcctttcatgggttttttgttccctattctaaggaggaatgaagtatccacccattggtc 601
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 115 tcctttcatgggttttttgttccatattctaaggaggaatgaagtatccacccattggtc 56

                                 
Query: 602 ttccctcttcttgattttcttg 623
           ||||||||||||||||||||||
Sbjct: 55  ttccctcttcttgattttcttg 34


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1024
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1014
Effective search space:   621582
Effective search space used:   621582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)