Query= MSMg01no536_f19.b1 MSMg01no536_f19.b1 CHROMAT_FILE:
MSMg01no536_f19.b1 PHD_FILE: MSMg01no536_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:26 2005
(620 letters)
>mm_chr13_49727312_49728331
Length = 1020
Score = 1168 bits (604), Expect = 0.0
Identities = 616/620 (99%)
Strand = Plus / Minus
Query: 1 tatatgtgtacctaatgtagttcagttattttttaaattttatttgtttatttattatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tatatgtgtacctaatgtagttcagttattttttaaattttatttgtttatttattatat 767
Query: 61 gtaaatacgctgtagctgtcttcatacaccccagaagagggagtcagatctcgttacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 gtaaatacgctgtagctgtcttcatacaccccagaagagggagtcagatctcgttacaga 707
Query: 121 tggttgtgagccaccatgaagttgctgggatttgaactccagaccttcagaagagcagtc 180
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tggttgtgagtcaccatgtagttgctgggatttgaactccagaccttcagaagagcagtc 647
Query: 181 aggtgctcttacccactgagccatctcaccagcctgttcagtcatttttatttactgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 aggtgctcttacccactgagccatctcaccagcctgttcagtcatttttatttactgttt 587
Query: 241 cttttgcccccttcctcttctcaactcactctaccttctaatttttcgtctttgtgtgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 cttttgcccccttcctcttctcaactcactctaccttctaatttttcgtctttgtgtgtg 527
Query: 301 tgtgcatataacacaatgttgtctgagaatggtaactttttcactcttgcatgttcccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tgtgcatataacacaatgttgtctgagaatggtaactttttcactcttgcatgttcccct 467
Query: 361 cattttccagtagaatttgtttttgtgcttgaaaaacaaatctgtattactatttttcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cattttccagtagaatttgtttttgtgcttgaaaaacaaatctgtattactatttttcta 407
Query: 421 ttattttattcatttacattacaaaagttgcccctcttcctggtcttcccttccccaagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttattttattcatttacattacaaaagttgcccctcttcctggtcttcccttccccaagt 347
Query: 481 tcttcccccatcccacgctgcctctaagagggtgttcccccacctgcccacccactccca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tcttcccccatcccacgctgcctctaagagggtgttcccccacctgcccacccactccca 287
Query: 541 cctcaccaacaccagcattcctcttccctggggcatcaagtttccacaggattaagtgca 600
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cctcgccaacaccagcattcctcttccctggggcatcaagtttccacaggattaagtgca 227
Query: 601 ttctctcccactgagaccag 620
|||||||||||| |||||||
Sbjct: 226 ttctctcccactaagaccag 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_f19.g1 MSMg01no536_f19.g1 CHROMAT_FILE:
MSMg01no536_f19.g1 PHD_FILE: MSMg01no536_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:26 2005
(554 letters)
>mm_chr13_49576199_49577152
Length = 954
Score = 1064 bits (550), Expect = 0.0
Identities = 553/554 (99%), Gaps = 1/554 (0%)
Strand = Plus / Plus
Query: 1 caggacagctagagctataaagtgagcgagactcttagaaagcccaaataaagacagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagctagagctataaagtgagcgagactcttagaaagcccaaataaagacagaat 260
Query: 61 agaaacctgaaaagctttttaaaaaatctgaatgtgtagtgtagttcttttttgtttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaacctgaaaagctttttaaaaaatctgaatgtgtagtgtagttcttttttgtttttc 320
Query: 121 tctctttcttgagacagaatctcactttgtagccacagctgtcctgtagctcagagatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctttcttgagacagaatctcactttgtagccacagctgtcctgtagctcagagatcc 380
Query: 181 agtggcttctggctcctgagtgttgggactcaatgtgtagccatcaggcctagctacatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtggcttctggctcctgagtgttgggactcaatgtgtagccatcaggcctagctacatg 440
Query: 241 tggtccttttcaatttggagtataacaagatgcaataaaacaaagcagctaagacaggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtccttttcaatttggagtataacaagatgcaataaaacaaagcagctaagacaggca 500
Query: 301 ttcaatctgagatatcataaacagccagaaatttaaaaaaaaaattaggtctatgtgaca 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 ttcaatctgagatatcataaacagccagaaatttaaaaaaaaa-ttaggtctatgtgaca 559
Query: 361 cttaatctgaaacctttacaagtacaagtacttagactattaggatacctgatagaaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttaatctgaaacctttacaagtacaagtacttagactattaggatacctgatagaaaag 619
Query: 421 gcagacagtaacatgaggggagaatgtagaaaacgtgggctattttgtaaaaccatttac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gcagacagtaacatgaggggagaatgtagaaaacgtgggctattttgtaaaaccatttac 679
Query: 481 aagtttccttttaccctttttaaagcatactatgcattttgaaatgatacattcatatag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aagtttccttttaccctttttaaagcatactatgcattttgaaatgatacattcatatag 739
Query: 541 taaacagaatgaaa 554
||||||||||||||
Sbjct: 740 taaacagaatgaaa 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
