Query= MSMg01no537_e07.b1 MSMg01no537_e07.b1 CHROMAT_FILE:
MSMg01no537_e07.b1 PHD_FILE: MSMg01no537_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:36 2005
(532 letters)
>mm_chr13_98004093_98005024
Length = 932
Score = 957 bits (495), Expect = 0.0
Identities = 515/525 (98%), Gaps = 9/525 (1%)
Strand = Plus / Minus
Query: 4 ggaattcactctgttgaccaggctggccttgaactcagaaatctgcctgtctccgcctcc 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggaattcactctgtagaccaggctggccttgaactcagaaatctgcctgtctccgcctcc 458
Query: 64 caagtgctgggattgaaggcatgtgccaccactgccctactcagagtttagttcttaacc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 caagtgctgggattgaaggcatgtgccaccactgccctactcagagtttagttcttaacc 398
Query: 124 actgacctgcactgcctcctctatctttctgtcactcacggtgcctgctttcctgccccc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 actgacctgcactgcctcctctatctttctgtcactcacggtgcctgctttcctgccccc 338
Query: 184 tggagtgctaggttagcatcccatttccttctatttttctgtctctgtctctctatctct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tggagtgctaggttagcatcccatttccttctatttttctgtctctgtctctctatctct 278
Query: 244 gtgtgtgtctctgtctctctgtctctctgtctctctgtctctctctctctcacacacaca 303
||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||
Sbjct: 277 gtgtgtgtctctgtctctctg--tctctgtctc----tctctctctctct--cacacaca 226
Query: 304 cacacacacacacacacacacacacacacacacactggatttataggaagagaagacatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 cacacacacacacacacacacacacacacacacactggatttataggaagagaagacatg 166
Query: 364 acatgtttgatttactttgccctatgttgacagatctgataacagtgtgacagacgagaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 acatgtttgatttactttgccctatgttgacagatctgataacagtgtgacagacgagaa 106
Query: 424 gctggaatcaattgactaaaattatactttttttttttt-aatccactttaccctttctc 482
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 105 gctggaatcaattgactaaaattatacttttttttttttaaatccactttaccctttctc 46
Query: 483 cacagttagttaccagatcatgttttcattctggcacactgtacc 527
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 cacagttagttaccagatcatgttttcattctggcacactgtacc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_e07.g1 MSMg01no537_e07.g1 CHROMAT_FILE:
MSMg01no537_e07.g1 PHD_FILE: MSMg01no537_e07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:36 2005
(542 letters)
>mm_chr13_97935499_97936445
Length = 947
Score = 712 bits (368), Expect = 0.0
Identities = 402/416 (96%), Gaps = 8/416 (1%)
Strand = Plus / Plus
Query: 132 cttgctcatctttcaccttgtcttgcaatggctcccctggacttctctgctgtagaaact 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cttgctcatctttcaccttgtcttgcaatggctcccctggacttctctgctgtagaaact 391
Query: 192 ctaggtctgagctcaaacatcaagctttatgaggctcttggtgagttctcac-tatgaac 250
|||||||||||||||| ||||| ||||||||| ||||| ||||||||||||| | |||||
Sbjct: 392 ctaggtctgagctcaagcatcatgctttatgaagctctcggtgagttctcacttgtgaac 451
Query: 251 accacctaaagacagacgttctggtgtcctttagtccccttcaaacaacttggatgcaca 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 accacctaaagacagacgttctggtgtcctttagtccccttcaaacaacttggatgcaca 511
Query: 311 gactatgggagatcaagagcaacctttatttcctttcca----tcctaagatgcaatgag 366
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 512 gactatgggagatcaagagcaacctttatttcctttccatatctcctaagatgcaatgag 571
Query: 367 agctgggcgtggtggcacacgcctttaatcccagcactcgggaagcagaggcaggcggat 426
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 572 agctgggcgtggtggcacacgcctttaat-ccagcactcgggaagcagaggcagtcggat 630
Query: 427 ttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagggctacaca 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagggctacaca 690
Query: 487 gagaaaccctgtctcaaaaac--aaaaaaaaaaaagatgcaatgagagacatatct 540
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 691 gagaaaccctgtctcaaaaaccaaaaaaaaaaaaagatgcaatgagagacatatct 746
Score = 85.8 bits (44), Expect = 7e-21
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 438 aggccagcctggtctacaaagtgagttccaggacagccagggctacacagagaaaccctg 497
||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||
Sbjct: 97 aggccagcctggtctacaaagtgagttccaggacagccaaggctacatagacaaatcctg 38
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 542
Length of database: 947
Length adjustment: 10
Effective length of query: 532
Effective length of database: 937
Effective search space: 498484
Effective search space used: 498484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
