BAC Information

Click to search

BAC

Clone NameMSMg01-537K11
Chromosome13 (Build37)
Map Location 57,416,038 - 57,601,109
singlet/doubletdoublet
Overlap geneSpock1
Upstream geneLOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7, LOC100040995
Downstream geneKlhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1, LOC100041086
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537K11.T7 (MSMg01no537_k11.b1)MSMg01-537K11.TJ (MSMg01no537_k11.g1)
ACCAG604573AG604574
length737731
length of high quality
(start - end)		560 (79 - 638)474 (82 - 555)
definitionCHROMAT_FILE: MSMg01no537_k11.b1 PHD_FILE: MSMg01no537_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:04 2005CHROMAT_FILE: MSMg01no537_k11.g1 PHD_FILE: MSMg01no537_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,600,550 - 57,601,109)(57,416,038 - 57,416,510)
sequence
NNAAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTAATGGTACACACAAGTTCTTATTGTTTTATTTAATA
AAACTTTTGTCTCTTGTGATGTATGCGATCTAACCATCCCTGTTTCCCTC
CTCCTACTTCTTCCACATGCCCCTCAACAAATCCCCCTGCTCTCTCTATG
CCTTACTATCTGAGATCCCTGTAGGTGAATGGGTCAGTGGGTTAAGATTC
AGACCCTTCAATCAAGGACACTCATCTCTGAGTTCCCTAAGCATATCACG
TTGGCCTTGGTCTATCCGCCCATGCAAAGTGTGTTTCAATGGCTCTCCTG
GTTGAAGCTGGCTGTCCCTTTACATCCATGCCTAGTATGGATGGGTTTTC
CCGCTCCCTGCATCTGAGGAAACACATAATCTTGCTTTGGATTTTGCCTT
GGTAACCGGCACAAGGCATTCTTTGAGATGCTACTTGGTGTTTGGGGCTC
CGTTAGGCTCTTGTGGGAACAGGGCACATTTCTAGGCAAAGAAGGGGAAG
AGGACTTTGGTTGCTGTTGTTGTAGTTTTGTCTGTTTGTTTGTTCACTCA
AGCTGGGAGTTTCTAGCACAAGAATTATACACAGTCCTATGTCATAGCAT
GTTTGTGTTCAAACCTGATTAACACTGGGCCAAGTAGAATAACAATCTGC
CTATTCAGGAAAATACAGCAAAACTGAGCCACCGAGA

NNNCCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCTCCCCTGAGAGGCAA
AGCCTCCTCTGGGTGCTGTGCAGTTGGAAGACCGTGTAGAAAACCAAGGG
GCTCGGTGGCAGGAAAATCCCAAGGACACAGCAGTTGTGCTGAGAGCTGA
GCTGCTTGATCAGGGCGGATAGCAGCCCGGGAAGGTGCAGCTCATGCTAG
GAGCTGGCTGAGCGGCCGTGGACGAGGTAGAGACAAGGACAAAGATGCTG
GACCTTAGATCCATGTCTGCACAGCCACATGCAGTGAGGGACTAGCCCAT
GAGTGCTATCAGATCTCTTCCTTACAAGAAAAATCCTACCAGGGTGCTGT
GGCTGCTGTGTATTTCTCAATGTTTCTAGTCTCTGAGATACTTCTAAACA
CAAGGAAGTGCTCCTCTGTTAATACATGTTAGTGCGGAGTAGTGTGTTGT
GTGCATGCATGTGTGTGTGGTGTGGTATGTGTGTGGTGTGGTATGTGTGT
GTGGNATNNNNNNNNNNNNNNNNNNNNTTTNNNTTNNNTTNTTTTTTTTT
NTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTNTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTT
TTTTTNTTTTTNTTTTTTTTTTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_k11.b1 MSMg01no537_k11.b1 CHROMAT_FILE:
MSMg01no537_k11.b1 PHD_FILE: MSMg01no537_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:04 2005
         (560 letters)



>mm_chr13_57600350_57601309
          Length = 960

 Score = 1052 bits (544), Expect = 0.0
 Identities = 556/560 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttcttattgttttatttaataaaacttttgtctcttgtgatgtatgcgatctaaccatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gttcttattgttttatttaataaaacttttgtctcttgtgatgtatgcgatctaaccatc 701

                                                                       
Query: 61  cctgtttccctcctcctacttcttccacatgcccctcaacaaatccccctgctctctcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 cctgtttccctcctcctacttcttccacatgcccctcaacaaatccccctgctctctcta 641

                                                                       
Query: 121 tgccttactatctgagatccctgtaggtgaatgggtcagtgggttaagattcagaccctt 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 640 tgccttactatctgagatccctgtaggtgaatgggtcaatgggttaagattcagaccctt 581

                                                                       
Query: 181 caatcaaggacactcatctctgagttccctaagcatatcacgttggccttggtctatccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 caatcaaggacactcatctctgagttccctaagcatatcacgttggccttggtctatccg 521

                                                                       
Query: 241 cccatgcaaagtgtgtttcaatggctctcctggttgaagctggctgtccctttacatcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 cccatgcaaagtgtgtttcaatggctctcctggttgaagctggctgtccctttacatcca 461

                                                                       
Query: 301 tgcctagtatggatgggttttcccgctccctgcatctgaggaaacacataatcttgcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tgcctagtatggatgggttttcccgctccctgcatctgaggaaacacataatcttgcttt 401

                                                                       
Query: 361 ggattttgccttggtaaccggcacaaggcattctttgagatgctacttggtgtttggggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggattttgccttggtaaccggcacaaggcattctttgagatgctacttggtgtttggggc 341

                                                                       
Query: 421 tccgttaggctcttgtgggaacagggcacatttctaggcaaagaaggggaagaggacttt 480
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 340 tccgttaagctcttgtgggaacagggcacatttctaggcaaagaaggggaagaggatttt 281

                                                                       
Query: 481 ggttgctgttgttgtagttttgtctgtttgtttgttcactcaagctgggagtttctagca 540
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 280 ggttgctgttgttgtagttttgtctgttggtttgttcactcaagctgggagtttctagca 221

                               
Query: 541 caagaattatacacagtcct 560
           ||||||||||||||||||||
Sbjct: 220 caagaattatacacagtcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no537_k11.g1 MSMg01no537_k11.g1 CHROMAT_FILE:
MSMg01no537_k11.g1 PHD_FILE: MSMg01no537_k11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:04 2005
         (474 letters)



>mm_chr13_57415838_57416711
          Length = 874

 Score =  845 bits (437), Expect = 0.0
 Identities = 464/473 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacctcccctgagaggcaaagcctcctctgggtgctgtgcagttggaagaccgtgtagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacctcccctgagaggcaaagcctcctctgggtgctgtgcagttggaagaccgtgtagaa 260

                                                                       
Query: 61  aaccaaggggctcggtggcaggaaaatcccaaggacacagcagttgtgctgagagctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 aaccaaggggctcggtggcaggaaaatcccaaggacacagcagttgtgctgagtgctgag 320

                                                                       
Query: 121 ctgcttgatcagggcggatagcagcccgggaaggtgcagctcatgctaggagctggctga 180
           |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ctgcttgatcagggaggatagcagcccgggaagatgcagctcatgctaggagctggctga 380

                                                                       
Query: 181 gcggccgtggacgaggtagagacaaggacaaagatgctggaccttagatccatgtctgca 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcgtccgtggacgaggtagagacaaggacaaagatgctggaccttagatccatgtctgca 440

                                                                       
Query: 241 cagccacatgcagtgagggactagcccatgagtgctatcagatctcttccttacaagaaa 300
           ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 cagccacatgcagcgagggactagcccatgagtgctatgagatctcttccttacaagaaa 500

                                                                       
Query: 301 aatcctaccagggtgctgtggctgctgtgtatttctcaatgtttctagtctctgagatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 aatcctaccagggtgctgtggctgctgtgtatttctcaatgtttctagtctctgagacac 560

                                                                       
Query: 361 ttctaaacacaaggaagtgctcctctgttaatacatgttagtgcggagtagtgtgttgtg 420
           |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 561 ttctaaacacaaggaagtgctcctctattaatacacgttagtgcggagtagtgtgttgtg 620

                                                                
Query: 421 tgcatgcatgtgtgtgtggtgtggtatgtgtgtggtgtggtatgtgtgtgtgg 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcatgcatgtgtgtgtggtgtggtatgtgtgtggtgtggtatgtgtgtgtgg 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |