Query= MSMg01no538_c06.b1 MSMg01no538_c06.b1 CHROMAT_FILE:
MSMg01no538_c06.b1 PHD_FILE: MSMg01no538_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:43 2005
(263 letters)
>mm_chr13_81745788_81746450
Length = 663
Score = 472 bits (244), Expect = e-137
Identities = 254/258 (98%), Gaps = 2/258 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttgaatctccattccccatggccattcattcctatcatcctgtgtaagacagt 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ggaattcttgaagctccattccccatggccattcattcctatcatcctgtgtaagacagt 282
Query: 64 agactaggcaggaacacagtgaggctcagcacagtgtctgctgctagagtggaggaaagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 agactaggcaggaacacagtgaggctcagcacagtgtctgctgctagagtggaggaaagc 222
Query: 124 ctgtattcttaaatcaatctccctccctccttctctcctccctctctccctctctccttc 183
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 221 ctgtattcttaaatcaatctccctcactccttctctcctccctctctccctctctccttc 162
Query: 184 aggtcccccatctgtgtgagtatgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 243
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 161 aggtcccccatctgtgtgagtatgtgta--tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 104
Query: 244 tgtgtatgaaggggtgtt 261
||||||||||||||||||
Sbjct: 103 tgtgtatgaaggggtgtt 86
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space: 166116
Effective search space used: 166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no538_c06.g1 MSMg01no538_c06.g1 CHROMAT_FILE:
MSMg01no538_c06.g1 PHD_FILE: MSMg01no538_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:43 2005
(606 letters)
>mm_chr13_81619968_81620971
Length = 1004
Score = 1073 bits (555), Expect = 0.0
Identities = 593/607 (97%), Gaps = 4/607 (0%)
Strand = Plus / Plus
Query: 1 tctacagtaagaagtgaggtcgaggcaagggaagggataaagactgaagaccgggcaagt 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tctacagtaagaagtgaggtcgaggcaagggaaggaataaagactgaagaccgggcaagt 260
Query: 61 atctctcactccttgaaggcgtattagaactaatttatcgcaacaacaaccttgacacga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 atctctcactccttgaaggcgtattagaactaatttatcgcaacaacaaccttgacacaa 320
Query: 121 gtgtagactcttgggtccttttacctgggcaaatgctacaactccataggcaccgtcatt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 gtgtagactcttgggtccttttacctgggcaaatgctacaactccataggcaccatcatt 380
Query: 181 ggcgagaacagtgactctcacagaactgctaatgccaatctctgctccgcctcttggact 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ggcgagaacagtgactctcacagaactgttaatgccaatctctgctccgcctcttggact 440
Query: 241 tttaagctgaactctgaatgattcttctttttcgggaactgtgtcatcaaggacatttac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaagctgaactctgaatgattcttctttttcgggaactgtgtcatcaaggacatttac 500
Query: 301 tgctatgattgcttccttgtcgccaggttcaaatatcagttcacctaaactagcatgaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctatgattgcttccttgtcgccaggttcaaatatcagttcacctaaactagcatgaga 560
Query: 361 agcagatttaaaatgagccagtgatgaccactgaacggtacatatgggagattaatccca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcagatttaaaatgagccagtgatgaccactgaacggtacatatgggagattaatccca 620
Query: 421 gattcctatcacactgaataacattgaagtctcacaaggaccgaaacattccataagtaa 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 gattcctatcacactgaataacattgaagtctcacaaggactgaaacattccataagtaa 680
Query: 481 aacatgcatacaaaatatccatataatactcgtcaacttgatagactagatactaaaaat 540
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 681 aacatgcatacaaaatatccatataatactggtcaacttgatagactacatactaaaaat 740
Query: 541 atggacaatgaacagatgtctggcttactaatggctgctatgttttacataaagcagtaa 600
||| |||| ||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 741 atgaacaacgaacagatgtctg---tactaatggctgctatgttttatataaagcagtaa 797
Query: 601 -tcaatc 606
||||||
Sbjct: 798 ctcaatc 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1004
Length adjustment: 10
Effective length of query: 596
Effective length of database: 994
Effective search space: 592424
Effective search space used: 592424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
