BAC Information

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BAC

Clone NameMSMg01-538G05
Chromosome13 (Build37)
Map Location 21,959,059 - 22,115,693
singlet/doubletdoublet
Overlap geneLOC665634, Zfp184, Gm24, Prss16
Upstream geneAoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622
Downstream geneHist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538G05.T7 (MSMg01no538_g05.b1)MSMg01-538G05.TJ (MSMg01no538_g05.g1)
ACCAG605129AG605130
length735746
length of high quality
(start - end)
679 (37 - 715)588 (66 - 653)
definitionCHROMAT_FILE: MSMg01no538_g05.b1 PHD_FILE: MSMg01no538_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:01 2005CHROMAT_FILE: MSMg01no538_g05.g1 PHD_FILE: MSMg01no538_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(22,115,019 - 22,115,693)(21,959,059 - 21,959,646)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCC
CTAAGAACACAGGGCTTAATAAAGGAGAAACTCTTTAATGATGATAGCAT
GCAACAGATCTTAATTAATGCTCAAAGGGGCACTGGCCTCAAGTAGAAAT
TTGTCACAGTTTACACAGGGTGTATTTTACCATTTTAATTTCACAAAATC
TTCAAAGCCATTGAAGGAACCATCTTGTCTCAACTGTTCCTTAATTATGT
ATTCTTGAGATTTCTTTTTTCCAGACAGTTTCTCTGCATATACCACTGGC
TGTCCTAGAACTCTCTATGTAGACCAGGTTGTCCTCAGACTCAGAGATCT
GCTTACCATGTTCTCCCAAGTGCCAGGATTAAAGATGTGTGCCATTATGC
CCAGCTCTTGGAGTGATTTTTATAAATATATATGTCTGATCTCCCATGTA
TTTACTCCTATGGTAGTACTCAAAACACTTTGATCTCACTTTGATTTTAT
ATTAAAGGCAGATGTGCACAAACACATCTCATATTCTCATTTTCTCTTTT
CTTTTTTGAGCCAGGGTCTCATGAAGCCCATGTTGGCCTCTAACTTACTA
TGTAATGGAGGATTTCCTAAAATTTATGCTCTTCCTGCCTCCACCTCCCC
AGTGCTAGAATTACAAGTGTATAACTACAGCCAACTCTTAAATGTACATA
TTTAGATGTATGTGTGTGTTTCCAAAATTGTACCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTAGAACATATCACCTGTAATTCAACGTAAGCCC
AGTTTTATGAATTATGAAATCTAAAACCTGCTATCAGGTAAAGCTCAATA
CATCATGAGTTATAAGCCACATGCTAGTGTAAAGTTGTCAGAGTGTCATA
AGCCAGGCAGAGTGTGGCATCACTTGTGATGCCAGGTACTAGCGGCCTAC
AGTGGGAAGGTTGCAAGTTTAAAGCTCCTGAGACACATGGTGAATTTAAG
ACTAGCCTGATCTCTGTAGCAAGACCATGTCTTAAAGAGAAATATCCAAG
CATCTAAATGCTGAGCAGTTTCATGGTAGAAACAGCTCTAAATCCTTTGC
ATGTGTGTTTGTTCAATAATCCCACTATGACCTGTGAGATGAGCTTACTC
TGATTTCCTTTTTCTGTATGGGGGGCTTACGTATGGAGAGAATAAAGCAG
TGGGTAGCAACAGAGTTTAAAGTAGGATTAGAATCCAAATTGCAGTAAGT
TCTAATTTAGAATGGTTACTTTGGCCAACTGTGCTGGATGGTCAACTTGA
AGTGAGTTAAAGTCATCTGAGAGGAGGGATCCTCAACTGAAACAATTTCT
CCATAAGATCTGGTTGTAGGCAATCCTGTAGGGCATTTTCCTTAATTAGT
GATTGATGGTAGAGGACCCTGCCCATTGTGGGTGGTGCCATCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_g05.b1 MSMg01no538_g05.b1 CHROMAT_FILE:
MSMg01no538_g05.b1 PHD_FILE: MSMg01no538_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:01 2005
         (679 letters)



>mm_chr13_22114618_22115696
          Length = 1079

 Score = 1274 bits (659), Expect = 0.0
 Identities = 671/675 (99%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcacccctaagaacacagggcttaataaaggagaaactctttaatgatgatagcat 64
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 gaattcacccccaagaacacagggcttaataaaggagaaactctttaatgatgatagcat 1017

                                                                        
Query: 65   gcaacagatcttaattaatgctcaaaggggcactggcctcaagtagaaatttgtcacagt 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 gcaacagatcttaattaatgctcaaaggggcactggcctcaagtagaaatttgtcacagt 957

                                                                        
Query: 125  ttacacagggtgtattttaccattttaatttcacaaaatcttcaaagccattgaaggaac 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  ttacacagggtgtattttaccattttaatttcacaaaatcttcaaagccattgaaggaac 897

                                                                        
Query: 185  catcttgtctcaactgttccttaattatgtattcttgagatttcttttttccagacagtt 244
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896  catcttggctcaactgttccttaattatgtattcttgagatttcttttttccagacagtt 837

                                                                        
Query: 245  tctctgcatataccactggctgtcctagaactctctatgtagaccaggttgtcctcagac 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  tctctgcatataccactggctgtcctagaactctctatgtagaccaggttgtcctcagac 777

                                                                        
Query: 305  tcagagatctgcttaccatgttctcccaagtgccaggattaaagatgtgtgccattatgc 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776  tcagagatctgcttaccatgttctcccaagtgccaggattaaagatgtgtgccattatgc 717

                                                                        
Query: 365  ccagctcttggagtgatttttataaatatatatgtctgatctcccatgtatttactccta 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716  ccagctcttggagtgatttttataaatatatatgtctgatctcccatgtatttactccta 657

                                                                        
Query: 425  tggtagtactcaaaacactttgatctcactttgattttatattaaaggcagatgtgcaca 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656  tggtagtactcaaaacactttgatctcactttgattttatattaaaggcagatgtgcaca 597

                                                                        
Query: 485  aacacatctcatattctcattttctcttttcttttttgagccagggtctcatgaagccca 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596  aacacatctcatattctcattttctcttttcttttttgagccagggtctcatgaagccca 537

                                                                        
Query: 545  tgttggcctctaacttactatgtaatggaggatttcctaaaatttatgctcttcctgcct 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536  tgttggcctctaacttactatgtaatggaggatttcctaaaatttatgctcttcctgcct 477

                                                                        
Query: 605  ccacctccccagtgctagaattacaagtgtataactacagccaactcttaaatgtacata 664
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 476  ccacctccccagtgctagaattacaggtgtataactacagccaactcttaaatgtgcata 417

                           
Query: 665  tttagatgtatgtgt 679
            |||||||||||||||
Sbjct: 416  tttagatgtatgtgt 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no538_g05.g1 MSMg01no538_g05.g1 CHROMAT_FILE:
MSMg01no538_g05.g1 PHD_FILE: MSMg01no538_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:01 2005
         (588 letters)



>mm_chr13_21958859_21959846
          Length = 988

 Score = 1137 bits (588), Expect = 0.0
 Identities = 588/588 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagaacatatcacctgtaattcaacgtaagcccagttttatgaattatgaaatctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagaacatatcacctgtaattcaacgtaagcccagttttatgaattatgaaatctaaa 260

                                                                       
Query: 61  acctgctatcaggtaaagctcaatacatcatgagttataagccacatgctagtgtaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctgctatcaggtaaagctcaatacatcatgagttataagccacatgctagtgtaaagt 320

                                                                       
Query: 121 tgtcagagtgtcataagccaggcagagtgtggcatcacttgtgatgccaggtactagcgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcagagtgtcataagccaggcagagtgtggcatcacttgtgatgccaggtactagcgg 380

                                                                       
Query: 181 cctacagtgggaaggttgcaagtttaaagctcctgagacacatggtgaatttaagactag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctacagtgggaaggttgcaagtttaaagctcctgagacacatggtgaatttaagactag 440

                                                                       
Query: 241 cctgatctctgtagcaagaccatgtcttaaagagaaatatccaagcatctaaatgctgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgatctctgtagcaagaccatgtcttaaagagaaatatccaagcatctaaatgctgag 500

                                                                       
Query: 301 cagtttcatggtagaaacagctctaaatcctttgcatgtgtgtttgttcaataatcccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtttcatggtagaaacagctctaaatcctttgcatgtgtgtttgttcaataatcccac 560

                                                                       
Query: 361 tatgacctgtgagatgagcttactctgatttcctttttctgtatggggggcttacgtatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatgacctgtgagatgagcttactctgatttcctttttctgtatggggggcttacgtatg 620

                                                                       
Query: 421 gagagaataaagcagtgggtagcaacagagtttaaagtaggattagaatccaaattgcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagagaataaagcagtgggtagcaacagagtttaaagtaggattagaatccaaattgcag 680

                                                                       
Query: 481 taagttctaatttagaatggttactttggccaactgtgctggatggtcaacttgaagtga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taagttctaatttagaatggttactttggccaactgtgctggatggtcaacttgaagtga 740

                                                           
Query: 541 gttaaagtcatctgagaggagggatcctcaactgaaacaatttctcca 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttaaagtcatctgagaggagggatcctcaactgaaacaatttctcca 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)